Hb_015974_010

Information

Type -
Description -
Location Contig15974: 13639-15648
Sequence    

Annotation

kegg
ID cit:102627687
description uncharacterized LOC102627687
nr
ID KEH24937.1
description endonuclease/exonuclease/phosphatase family protein [Medicago truncatula]
swissprot
ID -
description -
trembl
ID A0A072U5K4
description Endonuclease/exonuclease/phosphatase family protein OS=Medicago truncatula GN=MTR_6g009010 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015974_010 0.0 - - endonuclease/exonuclease/phosphatase family protein [Medicago truncatula]
2 Hb_030982_040 0.122185667 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
3 Hb_005653_120 0.1377386765 - - PREDICTED: fatty acyl-CoA reductase 3-like isoform X2 [Prunus mume]
4 Hb_005867_040 0.1614534924 transcription factor TF Family: RWP-RK PREDICTED: protein RKD4 [Jatropha curcas]
5 Hb_004453_140 0.1675886805 - - PREDICTED: uncharacterized protein LOC104880181 [Vitis vinifera]
6 Hb_113951_010 0.168918829 - - hypothetical protein JCGZ_06358 [Jatropha curcas]
7 Hb_000638_020 0.1722605091 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 9-like [Jatropha curcas]
8 Hb_011457_170 0.1763952812 - - PREDICTED: chlorophyllase-1-like [Jatropha curcas]
9 Hb_000809_050 0.1777400194 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105639663 isoform X2 [Jatropha curcas]
10 Hb_001102_010 0.1794987076 - - PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like isoform X2 [Glycine max]
11 Hb_000032_260 0.1799309046 - - PREDICTED: probable protein phosphatase 2C 51 [Jatropha curcas]
12 Hb_000340_430 0.1824845992 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_002820_140 0.1825427201 - - PREDICTED: uncharacterized protein LOC105638912 [Jatropha curcas]
14 Hb_005615_070 0.1854707343 - - Rab7 [Hevea brasiliensis]
15 Hb_000061_160 0.185653034 - - PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Jatropha curcas]
16 Hb_001198_030 0.1882132201 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
17 Hb_006452_060 0.1925543172 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
18 Hb_011457_100 0.1935983664 - - ATP binding protein, putative [Ricinus communis]
19 Hb_001488_100 0.1936319305 - - -
20 Hb_005000_290 0.1941334389 transcription factor TF Family: HSF hypothetical protein JCGZ_07430 [Jatropha curcas]

Gene co-expression network

sample Hb_015974_010 Hb_015974_010 Hb_030982_040 Hb_030982_040 Hb_015974_010--Hb_030982_040 Hb_005653_120 Hb_005653_120 Hb_015974_010--Hb_005653_120 Hb_005867_040 Hb_005867_040 Hb_015974_010--Hb_005867_040 Hb_004453_140 Hb_004453_140 Hb_015974_010--Hb_004453_140 Hb_113951_010 Hb_113951_010 Hb_015974_010--Hb_113951_010 Hb_000638_020 Hb_000638_020 Hb_015974_010--Hb_000638_020 Hb_030982_040--Hb_005653_120 Hb_000809_050 Hb_000809_050 Hb_030982_040--Hb_000809_050 Hb_000072_280 Hb_000072_280 Hb_030982_040--Hb_000072_280 Hb_006452_060 Hb_006452_060 Hb_030982_040--Hb_006452_060 Hb_001102_010 Hb_001102_010 Hb_030982_040--Hb_001102_010 Hb_001946_320 Hb_001946_320 Hb_005653_120--Hb_001946_320 Hb_002307_090 Hb_002307_090 Hb_005653_120--Hb_002307_090 Hb_005615_070 Hb_005615_070 Hb_005653_120--Hb_005615_070 Hb_005653_120--Hb_000809_050 Hb_000032_260 Hb_000032_260 Hb_005867_040--Hb_000032_260 Hb_031403_010 Hb_031403_010 Hb_005867_040--Hb_031403_010 Hb_000085_300 Hb_000085_300 Hb_005867_040--Hb_000085_300 Hb_005276_100 Hb_005276_100 Hb_005867_040--Hb_005276_100 Hb_000340_430 Hb_000340_430 Hb_005867_040--Hb_000340_430 Hb_003751_120 Hb_003751_120 Hb_005867_040--Hb_003751_120 Hb_002983_030 Hb_002983_030 Hb_004453_140--Hb_002983_030 Hb_015934_020 Hb_015934_020 Hb_004453_140--Hb_015934_020 Hb_000193_240 Hb_000193_240 Hb_004453_140--Hb_000193_240 Hb_000329_600 Hb_000329_600 Hb_004453_140--Hb_000329_600 Hb_001143_090 Hb_001143_090 Hb_004453_140--Hb_001143_090 Hb_011457_170 Hb_011457_170 Hb_004453_140--Hb_011457_170 Hb_000178_110 Hb_000178_110 Hb_113951_010--Hb_000178_110 Hb_000784_130 Hb_000784_130 Hb_113951_010--Hb_000784_130 Hb_000699_120 Hb_000699_120 Hb_113951_010--Hb_000699_120 Hb_012662_010 Hb_012662_010 Hb_113951_010--Hb_012662_010 Hb_000130_390 Hb_000130_390 Hb_113951_010--Hb_000130_390 Hb_000638_020--Hb_000193_240 Hb_000380_020 Hb_000380_020 Hb_000638_020--Hb_000380_020 Hb_000638_020--Hb_004453_140 Hb_163950_010 Hb_163950_010 Hb_000638_020--Hb_163950_010 Hb_000832_230 Hb_000832_230 Hb_000638_020--Hb_000832_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.168424 0 0 0 0.225102 0.0702198
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.182899 0.287523 0.253819 0.0293673 0

CAGE analysis