Hb_004453_140

Information

Type -
Description -
Location Contig4453: 94635-96014
Sequence    

Annotation

kegg
ID vvi:104880181
description uncharacterized LOC104880181
nr
ID XP_010654329.1
description PREDICTED: uncharacterized protein LOC104880181 [Vitis vinifera]
swissprot
ID Q9SD53
description UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=2 SV=1
trembl
ID F6HLQ1
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g05610 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42983: 95649-95919
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004453_140 0.0 - - PREDICTED: uncharacterized protein LOC104880181 [Vitis vinifera]
2 Hb_002983_030 0.1084988375 desease resistance Gene Name: NB-ARC hypothetical protein CISIN_1g046124mg, partial [Citrus sinensis]
3 Hb_015934_020 0.1101882561 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
4 Hb_000193_240 0.1128040599 - - hypothetical protein CISIN_1g0449881mg, partial [Citrus sinensis]
5 Hb_000329_600 0.1182662223 - - PREDICTED: cell number regulator 6-like isoform X2 [Populus euphratica]
6 Hb_001143_090 0.1204740171 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 6 [Jatropha curcas]
7 Hb_011457_170 0.1232702237 - - PREDICTED: chlorophyllase-1-like [Jatropha curcas]
8 Hb_003060_030 0.1272189467 - - conserved hypothetical protein 16 [Hevea brasiliensis]
9 Hb_005000_290 0.1316653738 transcription factor TF Family: HSF hypothetical protein JCGZ_07430 [Jatropha curcas]
10 Hb_000078_010 0.1351673899 - - hypothetical protein POPTR_0006s06510g, partial [Populus trichocarpa]
11 Hb_000567_250 0.1383477365 - - hypothetical protein B456_009G162000 [Gossypium raimondii]
12 Hb_007810_030 0.145075206 - - PREDICTED: uncharacterized protein LOC105647693 [Jatropha curcas]
13 Hb_005867_040 0.1496098568 transcription factor TF Family: RWP-RK PREDICTED: protein RKD4 [Jatropha curcas]
14 Hb_001232_130 0.1513336226 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1-like [Jatropha curcas]
15 Hb_010417_020 0.1529318047 - - interferon-induced GTP-binding protein mx, putative [Ricinus communis]
16 Hb_000032_260 0.1532256582 - - PREDICTED: probable protein phosphatase 2C 51 [Jatropha curcas]
17 Hb_002685_090 0.1553463162 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0004s04590g [Populus trichocarpa]
18 Hb_001213_120 0.1560284455 - - PREDICTED: immediate early response 3-interacting protein 1-like [Brassica rapa]
19 Hb_001396_220 0.1562093186 - - nuclear transport factor, putative [Ricinus communis]
20 Hb_010589_040 0.1573061798 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004453_140 Hb_004453_140 Hb_002983_030 Hb_002983_030 Hb_004453_140--Hb_002983_030 Hb_015934_020 Hb_015934_020 Hb_004453_140--Hb_015934_020 Hb_000193_240 Hb_000193_240 Hb_004453_140--Hb_000193_240 Hb_000329_600 Hb_000329_600 Hb_004453_140--Hb_000329_600 Hb_001143_090 Hb_001143_090 Hb_004453_140--Hb_001143_090 Hb_011457_170 Hb_011457_170 Hb_004453_140--Hb_011457_170 Hb_002983_030--Hb_000193_240 Hb_003060_030 Hb_003060_030 Hb_002983_030--Hb_003060_030 Hb_096225_020 Hb_096225_020 Hb_002983_030--Hb_096225_020 Hb_014497_110 Hb_014497_110 Hb_002983_030--Hb_014497_110 Hb_002983_030--Hb_001143_090 Hb_007810_030 Hb_007810_030 Hb_015934_020--Hb_007810_030 Hb_005000_290 Hb_005000_290 Hb_015934_020--Hb_005000_290 Hb_002387_060 Hb_002387_060 Hb_015934_020--Hb_002387_060 Hb_000032_220 Hb_000032_220 Hb_015934_020--Hb_000032_220 Hb_000078_010 Hb_000078_010 Hb_015934_020--Hb_000078_010 Hb_002685_090 Hb_002685_090 Hb_015934_020--Hb_002685_090 Hb_001268_400 Hb_001268_400 Hb_000193_240--Hb_001268_400 Hb_000749_250 Hb_000749_250 Hb_000193_240--Hb_000749_250 Hb_000193_240--Hb_001143_090 Hb_000193_240--Hb_003060_030 Hb_000329_600--Hb_005000_290 Hb_000329_600--Hb_015934_020 Hb_001396_220 Hb_001396_220 Hb_000329_600--Hb_001396_220 Hb_000427_110 Hb_000427_110 Hb_000329_600--Hb_000427_110 Hb_002374_460 Hb_002374_460 Hb_000329_600--Hb_002374_460 Hb_001143_090--Hb_000749_250 Hb_002392_040 Hb_002392_040 Hb_001143_090--Hb_002392_040 Hb_000363_010 Hb_000363_010 Hb_001143_090--Hb_000363_010 Hb_001278_050 Hb_001278_050 Hb_001143_090--Hb_001278_050 Hb_003943_030 Hb_003943_030 Hb_001143_090--Hb_003943_030 Hb_010417_020 Hb_010417_020 Hb_011457_170--Hb_010417_020 Hb_001488_100 Hb_001488_100 Hb_011457_170--Hb_001488_100 Hb_001946_320 Hb_001946_320 Hb_011457_170--Hb_001946_320 Hb_011457_170--Hb_005000_290 Hb_000157_010 Hb_000157_010 Hb_011457_170--Hb_000157_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.9896 1.0488 0.473835 1.02685 31.5295 33.0163
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
50.1164 78.798 93.9397 12.9879 0

CAGE analysis