Hb_000193_240

Information

Type -
Description -
Location Contig193: 215912-221098
Sequence    

Annotation

kegg
ID fve:101306531
description pentatricopeptide repeat-containing protein At1g08070-like
nr
ID KDO55501.1
description hypothetical protein CISIN_1g0449881mg, partial [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067EX13
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0449881mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19254: 217315-217573 , PASA_asmbl_19255: 218381-218604
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000193_240 0.0 - - hypothetical protein CISIN_1g0449881mg, partial [Citrus sinensis]
2 Hb_002983_030 0.1102015061 desease resistance Gene Name: NB-ARC hypothetical protein CISIN_1g046124mg, partial [Citrus sinensis]
3 Hb_004453_140 0.1128040599 - - PREDICTED: uncharacterized protein LOC104880181 [Vitis vinifera]
4 Hb_001268_400 0.1261446133 - - PREDICTED: uncharacterized protein LOC104583970 [Brachypodium distachyon]
5 Hb_000749_250 0.143101553 - - PREDICTED: lanC-like protein GCR2 [Jatropha curcas]
6 Hb_001143_090 0.1455310013 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 6 [Jatropha curcas]
7 Hb_003060_030 0.1508477665 - - conserved hypothetical protein 16 [Hevea brasiliensis]
8 Hb_001232_130 0.1520766329 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1-like [Jatropha curcas]
9 Hb_000638_020 0.1594832277 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 9-like [Jatropha curcas]
10 Hb_010417_020 0.161649126 - - interferon-induced GTP-binding protein mx, putative [Ricinus communis]
11 Hb_000567_250 0.1690844546 - - hypothetical protein B456_009G162000 [Gossypium raimondii]
12 Hb_011457_170 0.169560839 - - PREDICTED: chlorophyllase-1-like [Jatropha curcas]
13 Hb_001766_100 0.1710344662 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_015934_020 0.1739126095 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
15 Hb_004871_050 0.1784073536 - - hypothetical protein F383_22684 [Gossypium arboreum]
16 Hb_000367_280 0.1790990038 - - PREDICTED: flavin-containing monooxygenase FMO GS-OX-like 9 [Jatropha curcas]
17 Hb_002685_090 0.1798764166 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0004s04590g [Populus trichocarpa]
18 Hb_014497_110 0.1811758008 - - PREDICTED: AT-hook motif nuclear-localized protein 25-like [Jatropha curcas]
19 Hb_001946_320 0.181912474 - - PREDICTED: F-box/kelch-repeat protein At1g55270-like [Jatropha curcas]
20 Hb_006594_020 0.1841155531 - - PREDICTED: uncharacterized protein LOC105138974 isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_000193_240 Hb_000193_240 Hb_002983_030 Hb_002983_030 Hb_000193_240--Hb_002983_030 Hb_004453_140 Hb_004453_140 Hb_000193_240--Hb_004453_140 Hb_001268_400 Hb_001268_400 Hb_000193_240--Hb_001268_400 Hb_000749_250 Hb_000749_250 Hb_000193_240--Hb_000749_250 Hb_001143_090 Hb_001143_090 Hb_000193_240--Hb_001143_090 Hb_003060_030 Hb_003060_030 Hb_000193_240--Hb_003060_030 Hb_002983_030--Hb_004453_140 Hb_002983_030--Hb_003060_030 Hb_096225_020 Hb_096225_020 Hb_002983_030--Hb_096225_020 Hb_014497_110 Hb_014497_110 Hb_002983_030--Hb_014497_110 Hb_002983_030--Hb_001143_090 Hb_015934_020 Hb_015934_020 Hb_004453_140--Hb_015934_020 Hb_000329_600 Hb_000329_600 Hb_004453_140--Hb_000329_600 Hb_004453_140--Hb_001143_090 Hb_011457_170 Hb_011457_170 Hb_004453_140--Hb_011457_170 Hb_001268_400--Hb_000749_250 Hb_004871_050 Hb_004871_050 Hb_001268_400--Hb_004871_050 Hb_010417_020 Hb_010417_020 Hb_001268_400--Hb_010417_020 Hb_001232_130 Hb_001232_130 Hb_001268_400--Hb_001232_130 Hb_152439_020 Hb_152439_020 Hb_001268_400--Hb_152439_020 Hb_000749_250--Hb_001232_130 Hb_003943_030 Hb_003943_030 Hb_000749_250--Hb_003943_030 Hb_000749_250--Hb_001143_090 Hb_163950_010 Hb_163950_010 Hb_000749_250--Hb_163950_010 Hb_001959_160 Hb_001959_160 Hb_000749_250--Hb_001959_160 Hb_001946_320 Hb_001946_320 Hb_000749_250--Hb_001946_320 Hb_002392_040 Hb_002392_040 Hb_001143_090--Hb_002392_040 Hb_000363_010 Hb_000363_010 Hb_001143_090--Hb_000363_010 Hb_001278_050 Hb_001278_050 Hb_001143_090--Hb_001278_050 Hb_001143_090--Hb_003943_030 Hb_004297_040 Hb_004297_040 Hb_003060_030--Hb_004297_040 Hb_003060_030--Hb_004453_140 Hb_005908_040 Hb_005908_040 Hb_003060_030--Hb_005908_040 Hb_000078_010 Hb_000078_010 Hb_003060_030--Hb_000078_010 Hb_012395_210 Hb_012395_210 Hb_003060_030--Hb_012395_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.85118 0.214121 0.017029 0.0501135 3.03565 2.40146
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.69609 9.32703 14.575 1.05793 0.0841385

CAGE analysis