Hb_012395_210

Information

Type -
Description -
Location Contig12395: 104705-106297
Sequence    

Annotation

kegg
ID rcu:RCOM_1217400
description hypothetical protein
nr
ID XP_002528353.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SQT4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1217400 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012395_210 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004297_040 0.1187590131 - - acyl CoA reductase [Hevea brasiliensis]
3 Hb_000078_010 0.1206600481 - - hypothetical protein POPTR_0006s06510g, partial [Populus trichocarpa]
4 Hb_001213_120 0.1209458253 - - PREDICTED: immediate early response 3-interacting protein 1-like [Brassica rapa]
5 Hb_000367_280 0.1284411812 - - PREDICTED: flavin-containing monooxygenase FMO GS-OX-like 9 [Jatropha curcas]
6 Hb_001102_250 0.1303335647 - - PREDICTED: E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X1 [Jatropha curcas]
7 Hb_005539_210 0.132793512 - - -
8 Hb_010594_030 0.1338215556 - - -
9 Hb_001012_040 0.1357939994 - - PREDICTED: MADS-box transcription factor 23-like isoform X2 [Jatropha curcas]
10 Hb_003060_030 0.1373660663 - - conserved hypothetical protein 16 [Hevea brasiliensis]
11 Hb_000300_400 0.1375866538 - - hypothetical protein PHAVU_001G114100g [Phaseolus vulgaris]
12 Hb_009838_040 0.1380655507 - - hypothetical protein JCGZ_12866 [Jatropha curcas]
13 Hb_001723_080 0.1381618595 - - hypothetical protein L484_026139 [Morus notabilis]
14 Hb_000059_350 0.1405589045 - - glutamate dehydrogenase, putative [Ricinus communis]
15 Hb_007810_030 0.1456300992 - - PREDICTED: uncharacterized protein LOC105647693 [Jatropha curcas]
16 Hb_012395_200 0.147881564 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003095_070 0.1504843277 - - hypothetical protein POPTR_0009s11230g [Populus trichocarpa]
18 Hb_034585_050 0.1518298019 - - -
19 Hb_006351_110 0.1544062881 - - -
20 Hb_003349_070 0.1576135593 - - PREDICTED: signal recognition particle 14 kDa protein [Gossypium raimondii]

Gene co-expression network

sample Hb_012395_210 Hb_012395_210 Hb_004297_040 Hb_004297_040 Hb_012395_210--Hb_004297_040 Hb_000078_010 Hb_000078_010 Hb_012395_210--Hb_000078_010 Hb_001213_120 Hb_001213_120 Hb_012395_210--Hb_001213_120 Hb_000367_280 Hb_000367_280 Hb_012395_210--Hb_000367_280 Hb_001102_250 Hb_001102_250 Hb_012395_210--Hb_001102_250 Hb_005539_210 Hb_005539_210 Hb_012395_210--Hb_005539_210 Hb_004297_040--Hb_000367_280 Hb_004297_040--Hb_001213_120 Hb_078633_010 Hb_078633_010 Hb_004297_040--Hb_078633_010 Hb_005137_020 Hb_005137_020 Hb_004297_040--Hb_005137_020 Hb_004297_040--Hb_001102_250 Hb_001268_080 Hb_001268_080 Hb_004297_040--Hb_001268_080 Hb_007810_030 Hb_007810_030 Hb_000078_010--Hb_007810_030 Hb_015934_020 Hb_015934_020 Hb_000078_010--Hb_015934_020 Hb_000078_010--Hb_000367_280 Hb_000078_010--Hb_001213_120 Hb_111648_010 Hb_111648_010 Hb_000078_010--Hb_111648_010 Hb_000078_010--Hb_004297_040 Hb_001213_120--Hb_000367_280 Hb_001213_120--Hb_001268_080 Hb_001213_120--Hb_078633_010 Hb_001213_120--Hb_015934_020 Hb_001213_120--Hb_007810_030 Hb_000367_280--Hb_001268_080 Hb_011245_020 Hb_011245_020 Hb_000367_280--Hb_011245_020 Hb_000367_280--Hb_007810_030 Hb_000367_280--Hb_078633_010 Hb_072912_020 Hb_072912_020 Hb_001102_250--Hb_072912_020 Hb_003095_070 Hb_003095_070 Hb_001102_250--Hb_003095_070 Hb_000544_110 Hb_000544_110 Hb_001102_250--Hb_000544_110 Hb_005841_040 Hb_005841_040 Hb_001102_250--Hb_005841_040 Hb_001102_250--Hb_005137_020 Hb_000300_400 Hb_000300_400 Hb_005539_210--Hb_000300_400 Hb_001012_040 Hb_001012_040 Hb_005539_210--Hb_001012_040 Hb_002492_020 Hb_002492_020 Hb_005539_210--Hb_002492_020 Hb_010594_030 Hb_010594_030 Hb_005539_210--Hb_010594_030 Hb_001723_080 Hb_001723_080 Hb_005539_210--Hb_001723_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.22651 0.535577 0.380174 0.99717 12.0278 17.104
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
59.7554 71.149 51.806 10.1594 0.199015

CAGE analysis