Hb_005539_210

Information

Type -
Description -
Location Contig5539: 148683-151076
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 024_O06.ab1: 149037-150744

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005539_210 0.0 - - -
2 Hb_000300_400 0.1136146124 - - hypothetical protein PHAVU_001G114100g [Phaseolus vulgaris]
3 Hb_012395_210 0.132793512 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001012_040 0.1371047574 - - PREDICTED: MADS-box transcription factor 23-like isoform X2 [Jatropha curcas]
5 Hb_002492_020 0.1388486401 - - PREDICTED: uncharacterized protein LOC104789613 [Camelina sativa]
6 Hb_010594_030 0.1401956269 - - -
7 Hb_001723_080 0.1426762942 - - hypothetical protein L484_026139 [Morus notabilis]
8 Hb_006745_060 0.1465374615 - - -
9 Hb_075653_020 0.1482188189 - - -
10 Hb_005211_070 0.1507579658 - - PREDICTED: uncharacterized protein LOC105642009 [Jatropha curcas]
11 Hb_005214_130 0.1533369049 - - -
12 Hb_001959_260 0.1582940376 - - -
13 Hb_008699_040 0.1608960601 - - -
14 Hb_000106_100 0.1649125103 - - -
15 Hb_000603_210 0.1667980909 - - hypothetical protein POPTR_0006s23660g [Populus trichocarpa]
16 Hb_003349_070 0.1698593471 - - PREDICTED: signal recognition particle 14 kDa protein [Gossypium raimondii]
17 Hb_001349_010 0.1703126239 - - -
18 Hb_003777_230 0.1703980338 - - PREDICTED: abscisic stress-ripening protein 1-like [Citrus sinensis]
19 Hb_003211_050 0.1726005344 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
20 Hb_000215_180 0.1734356372 - - hypothetical protein 17 [Hevea brasiliensis]

Gene co-expression network

sample Hb_005539_210 Hb_005539_210 Hb_000300_400 Hb_000300_400 Hb_005539_210--Hb_000300_400 Hb_012395_210 Hb_012395_210 Hb_005539_210--Hb_012395_210 Hb_001012_040 Hb_001012_040 Hb_005539_210--Hb_001012_040 Hb_002492_020 Hb_002492_020 Hb_005539_210--Hb_002492_020 Hb_010594_030 Hb_010594_030 Hb_005539_210--Hb_010594_030 Hb_001723_080 Hb_001723_080 Hb_005539_210--Hb_001723_080 Hb_000603_210 Hb_000603_210 Hb_000300_400--Hb_000603_210 Hb_149683_010 Hb_149683_010 Hb_000300_400--Hb_149683_010 Hb_006816_440 Hb_006816_440 Hb_000300_400--Hb_006816_440 Hb_002235_230 Hb_002235_230 Hb_000300_400--Hb_002235_230 Hb_000300_400--Hb_001723_080 Hb_004297_040 Hb_004297_040 Hb_012395_210--Hb_004297_040 Hb_000078_010 Hb_000078_010 Hb_012395_210--Hb_000078_010 Hb_001213_120 Hb_001213_120 Hb_012395_210--Hb_001213_120 Hb_000367_280 Hb_000367_280 Hb_012395_210--Hb_000367_280 Hb_001102_250 Hb_001102_250 Hb_012395_210--Hb_001102_250 Hb_001012_040--Hb_001723_080 Hb_000454_110 Hb_000454_110 Hb_001012_040--Hb_000454_110 Hb_001012_040--Hb_012395_210 Hb_004206_030 Hb_004206_030 Hb_001012_040--Hb_004206_030 Hb_001012_040--Hb_001213_120 Hb_010166_020 Hb_010166_020 Hb_002492_020--Hb_010166_020 Hb_002492_020--Hb_010594_030 Hb_004055_060 Hb_004055_060 Hb_002492_020--Hb_004055_060 Hb_001198_030 Hb_001198_030 Hb_002492_020--Hb_001198_030 Hb_007741_040 Hb_007741_040 Hb_002492_020--Hb_007741_040 Hb_034585_050 Hb_034585_050 Hb_010594_030--Hb_034585_050 Hb_010594_030--Hb_001102_250 Hb_005211_070 Hb_005211_070 Hb_010594_030--Hb_005211_070 Hb_010594_030--Hb_012395_210 Hb_006351_110 Hb_006351_110 Hb_010594_030--Hb_006351_110 Hb_001723_080--Hb_000454_110 Hb_008705_090 Hb_008705_090 Hb_001723_080--Hb_008705_090 Hb_012395_200 Hb_012395_200 Hb_001723_080--Hb_012395_200 Hb_001723_080--Hb_012395_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.25945 0.200969 0.0230862 0.0261492 1.32921 1.23123
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.04016 6.26622 3.3999 1.52808 0

CAGE analysis