Hb_012395_200

Information

Type -
Description -
Location Contig12395: 102806-103117
Sequence    

Annotation

kegg
ID rcu:RCOM_1217420
description hypothetical protein
nr
ID XP_002528355.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9FNC9
description Mitochondrial import receptor subunit TOM9-2 OS=Arabidopsis thaliana GN=TOM9-2 PE=1 SV=3
trembl
ID B9SQT6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1217420 PE=4 SV=1
Gene Ontology
ID GO:0005742
description mitochondrial import receptor subunit tom9-2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07283: 102571-103145
cDNA
(Sanger)
(ID:Location)		 019_I18.ab1: 102617-103145 , 026_M12.ab1: 102617-103145 , 028_M22.ab1: 102572-103147 , 044_M02.ab1: 102734-103145

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012395_200 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000684_160 0.1219586002 - - PREDICTED: lipid phosphate phosphatase gamma, chloroplastic [Jatropha curcas]
3 Hb_001008_010 0.1262688154 - - PREDICTED: 30S ribosomal protein S17, chloroplastic-like [Populus euphratica]
4 Hb_000078_010 0.1303951627 - - hypothetical protein POPTR_0006s06510g, partial [Populus trichocarpa]
5 Hb_001723_080 0.1344269936 - - hypothetical protein L484_026139 [Morus notabilis]
6 Hb_007810_030 0.1355510797 - - PREDICTED: uncharacterized protein LOC105647693 [Jatropha curcas]
7 Hb_074590_010 0.1370549744 transcription factor TF Family: ERF ethylene-responsive element binding protein 2 [Hevea brasiliensis]
8 Hb_000454_110 0.1429980492 - - PREDICTED: polyprenol reductase 2-like isoform X3 [Populus euphratica]
9 Hb_001629_100 0.1430685127 - - PREDICTED: uncharacterized protein LOC100252136 isoform X2 [Vitis vinifera]
10 Hb_001473_120 0.1431887941 - - Uncharacterized protein isoform 1 [Theobroma cacao]
11 Hb_116264_010 0.1437767766 - - hypothetical protein JCGZ_05585 [Jatropha curcas]
12 Hb_012395_210 0.147881564 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000032_220 0.1492971904 - - PREDICTED: abscisic acid receptor PYL8-like isoform X1 [Jatropha curcas]
14 Hb_001396_220 0.1506015691 - - nuclear transport factor, putative [Ricinus communis]
15 Hb_003349_070 0.1523126924 - - PREDICTED: signal recognition particle 14 kDa protein [Gossypium raimondii]
16 Hb_000039_170 0.1541272418 - - protein MOTHER of FT and TF 1-like [Jatropha curcas]
17 Hb_001935_030 0.1550474026 - - conserved hypothetical protein [Ricinus communis]
18 Hb_111648_010 0.1575878291 rubber biosynthesis Gene Name: REF1 rubber elongation factor [Hevea brasiliensis]
19 Hb_001221_510 0.1620295738 - - Protein HVA22, putative [Ricinus communis]
20 Hb_001754_010 0.1620505059 - - translationally controlled tumor protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_012395_200 Hb_012395_200 Hb_000684_160 Hb_000684_160 Hb_012395_200--Hb_000684_160 Hb_001008_010 Hb_001008_010 Hb_012395_200--Hb_001008_010 Hb_000078_010 Hb_000078_010 Hb_012395_200--Hb_000078_010 Hb_001723_080 Hb_001723_080 Hb_012395_200--Hb_001723_080 Hb_007810_030 Hb_007810_030 Hb_012395_200--Hb_007810_030 Hb_074590_010 Hb_074590_010 Hb_012395_200--Hb_074590_010 Hb_003349_070 Hb_003349_070 Hb_000684_160--Hb_003349_070 Hb_000684_160--Hb_007810_030 Hb_103752_010 Hb_103752_010 Hb_000684_160--Hb_103752_010 Hb_000684_160--Hb_001008_010 Hb_011245_020 Hb_011245_020 Hb_000684_160--Hb_011245_020 Hb_001629_100 Hb_001629_100 Hb_001008_010--Hb_001629_100 Hb_001173_040 Hb_001173_040 Hb_001008_010--Hb_001173_040 Hb_012265_010 Hb_012265_010 Hb_001008_010--Hb_012265_010 Hb_010172_030 Hb_010172_030 Hb_001008_010--Hb_010172_030 Hb_002539_090 Hb_002539_090 Hb_001008_010--Hb_002539_090 Hb_001754_010 Hb_001754_010 Hb_001008_010--Hb_001754_010 Hb_000078_010--Hb_007810_030 Hb_015934_020 Hb_015934_020 Hb_000078_010--Hb_015934_020 Hb_000367_280 Hb_000367_280 Hb_000078_010--Hb_000367_280 Hb_001213_120 Hb_001213_120 Hb_000078_010--Hb_001213_120 Hb_111648_010 Hb_111648_010 Hb_000078_010--Hb_111648_010 Hb_004297_040 Hb_004297_040 Hb_000078_010--Hb_004297_040 Hb_000454_110 Hb_000454_110 Hb_001723_080--Hb_000454_110 Hb_001012_040 Hb_001012_040 Hb_001723_080--Hb_001012_040 Hb_000300_400 Hb_000300_400 Hb_001723_080--Hb_000300_400 Hb_008705_090 Hb_008705_090 Hb_001723_080--Hb_008705_090 Hb_012395_210 Hb_012395_210 Hb_001723_080--Hb_012395_210 Hb_007810_030--Hb_015934_020 Hb_007810_030--Hb_000367_280 Hb_007810_030--Hb_011245_020 Hb_007810_030--Hb_001213_120 Hb_000032_220 Hb_000032_220 Hb_007810_030--Hb_000032_220 Hb_001473_120 Hb_001473_120 Hb_074590_010--Hb_001473_120 Hb_116264_010 Hb_116264_010 Hb_074590_010--Hb_116264_010 Hb_074590_010--Hb_007810_030 Hb_002660_160 Hb_002660_160 Hb_074590_010--Hb_002660_160 Hb_009680_050 Hb_009680_050 Hb_074590_010--Hb_009680_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
311.198 35.9546 19.8888 64.3153 301.537 1325.81
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1600.23 2054.7 1335.55 350.893 26.1684

CAGE analysis