Hb_001629_100

Information

Type -
Description -
Location Contig1629: 65876-68939
Sequence    

Annotation

kegg
ID vvi:100252136
description uncharacterized LOC100252136
nr
ID XP_010644233.1
description PREDICTED: uncharacterized protein LOC100252136 isoform X2 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID E0CSR7
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0014g03480 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14789: 67090-68996 , PASA_asmbl_14790: 69429-71393
cDNA
(Sanger)
(ID:Location)		 001_J04.ab1: 67094-68996 , 003_I01.ab1: 67121-68996 , 006_C24.ab1: 67095-68994 , 009_H07.ab1: 67094-68996 , 022_F24.ab1: 67094-68998 , 031_H18.ab1: 69584-71357 , 035_L01.ab1: 69467-71347 , 038_D17.ab1: 67094-68996 , 045_H04.ab1: 67090-68996 , 046_O06.ab1: 67094-68996 , 048_B22.ab1: 67094-68998 , 052_J17.ab1: 67090-68996 , 053_N12.ab1: 67094-68996

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001629_100 0.0 - - PREDICTED: uncharacterized protein LOC100252136 isoform X2 [Vitis vinifera]
2 Hb_001754_010 0.0599481081 - - translationally controlled tumor protein [Hevea brasiliensis]
3 Hb_001008_010 0.097105398 - - PREDICTED: 30S ribosomal protein S17, chloroplastic-like [Populus euphratica]
4 Hb_130291_010 0.1053777632 - - PREDICTED: protein PEROXIN-4 isoform X1 [Jatropha curcas]
5 Hb_000120_590 0.1073329332 - - PREDICTED: uncharacterized protein LOC105116418 [Populus euphratica]
6 Hb_098315_120 0.1130778368 - - -
7 Hb_100777_010 0.1173824792 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like [Populus euphratica]
8 Hb_012265_010 0.1216864037 - - hypothetical protein CISIN_1g026883mg [Citrus sinensis]
9 Hb_000608_420 0.1242688052 - - PREDICTED: endoribonuclease Dicer homolog 2 [Jatropha curcas]
10 Hb_010172_030 0.1246225357 - - hypothetical protein JCGZ_04668 [Jatropha curcas]
11 Hb_008847_020 0.1271174511 - - 40S ribosomal protein S17C [Hevea brasiliensis]
12 Hb_007594_090 0.1279697217 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
13 Hb_003680_070 0.128084242 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
14 Hb_000184_050 0.1287238708 - - NOI, putative [Ricinus communis]
15 Hb_000175_400 0.1299280839 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000479_180 0.1301285506 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001173_040 0.1307989453 - - PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Jatropha curcas]
18 Hb_008511_110 0.1309255597 - - PREDICTED: uncharacterized protein LOC105134715 [Populus euphratica]
19 Hb_000865_070 0.1314457868 - - Protein FAR1-RELATED SEQUENCE 3 [Glycine soja]
20 Hb_004116_040 0.1317008798 transcription factor TF Family: HMG hypothetical protein POPTR_0010s19720g [Populus trichocarpa]

Gene co-expression network

sample Hb_001629_100 Hb_001629_100 Hb_001754_010 Hb_001754_010 Hb_001629_100--Hb_001754_010 Hb_001008_010 Hb_001008_010 Hb_001629_100--Hb_001008_010 Hb_130291_010 Hb_130291_010 Hb_001629_100--Hb_130291_010 Hb_000120_590 Hb_000120_590 Hb_001629_100--Hb_000120_590 Hb_098315_120 Hb_098315_120 Hb_001629_100--Hb_098315_120 Hb_100777_010 Hb_100777_010 Hb_001629_100--Hb_100777_010 Hb_001754_010--Hb_000120_590 Hb_001754_010--Hb_100777_010 Hb_001754_010--Hb_130291_010 Hb_000333_090 Hb_000333_090 Hb_001754_010--Hb_000333_090 Hb_010172_030 Hb_010172_030 Hb_001754_010--Hb_010172_030 Hb_001173_040 Hb_001173_040 Hb_001008_010--Hb_001173_040 Hb_012265_010 Hb_012265_010 Hb_001008_010--Hb_012265_010 Hb_001008_010--Hb_010172_030 Hb_002539_090 Hb_002539_090 Hb_001008_010--Hb_002539_090 Hb_001008_010--Hb_001754_010 Hb_000184_050 Hb_000184_050 Hb_130291_010--Hb_000184_050 Hb_130291_010--Hb_012265_010 Hb_001433_050 Hb_001433_050 Hb_130291_010--Hb_001433_050 Hb_000024_030 Hb_000024_030 Hb_130291_010--Hb_000024_030 Hb_000199_070 Hb_000199_070 Hb_130291_010--Hb_000199_070 Hb_000975_110 Hb_000975_110 Hb_130291_010--Hb_000975_110 Hb_008511_110 Hb_008511_110 Hb_000120_590--Hb_008511_110 Hb_148209_120 Hb_148209_120 Hb_000120_590--Hb_148209_120 Hb_005398_030 Hb_005398_030 Hb_000120_590--Hb_005398_030 Hb_000120_590--Hb_130291_010 Hb_008847_020 Hb_008847_020 Hb_098315_120--Hb_008847_020 Hb_098315_120--Hb_130291_010 Hb_098315_120--Hb_000184_050 Hb_098315_120--Hb_012265_010 Hb_011139_020 Hb_011139_020 Hb_098315_120--Hb_011139_020 Hb_000087_020 Hb_000087_020 Hb_100777_010--Hb_000087_020 Hb_001235_070 Hb_001235_070 Hb_100777_010--Hb_001235_070 Hb_000362_210 Hb_000362_210 Hb_100777_010--Hb_000362_210 Hb_100777_010--Hb_000333_090 Hb_001369_050 Hb_001369_050 Hb_100777_010--Hb_001369_050 Hb_002259_150 Hb_002259_150 Hb_100777_010--Hb_002259_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
115.948 25.9101 15.5115 71.2396 143.45 406.954
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
519.935 462.316 278.844 181.229 17.1525

CAGE analysis