Hb_002259_150

Information

Type -
Description -
Location Contig2259: 98482-98814
Sequence    

Annotation

kegg
ID atr:s00007p00096840
description AMTR_s00007p00096840; hypothetical protein
nr
ID CDX97861.1
description BnaC04g40780D [Brassica napus]
swissprot
ID Q0WMV8
description PHD finger-like domain-containing protein 5B OS=Arabidopsis thaliana GN=At1g07170 PE=2 SV=1
trembl
ID A0A0D3G1A3
description Uncharacterized protein OS=Oryza barthii PE=4 SV=1
Gene Ontology
ID GO:0005689
description phd finger-like domain-containing protein 5b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23472: 95832-98989
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002259_150 0.0 - - BnaC04g40780D [Brassica napus]
2 Hb_007317_060 0.0801520163 - - 60S ribosomal protein L10aB [Hevea brasiliensis]
3 Hb_002272_260 0.0913126468 - - -
4 Hb_102156_010 0.0917832387 - - conserved hypothetical protein [Ricinus communis]
5 Hb_100777_010 0.0937428459 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like [Populus euphratica]
6 Hb_004453_150 0.0946458814 - - BnaC02g13240D [Brassica napus]
7 Hb_000193_350 0.0986389191 - - eukaryotic translation initiation factor 5A isoform VI [Hevea brasiliensis]
8 Hb_000175_400 0.0995321461 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003687_020 0.1006975462 - - PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]
10 Hb_000771_100 0.1030909464 - - Os06g0527300 [Oryza sativa Japonica Group]
11 Hb_025193_050 0.1040132552 - - PREDICTED: uncharacterized protein LOC105647290 isoform X1 [Jatropha curcas]
12 Hb_015057_010 0.1046197222 - - PREDICTED: uncharacterized exonuclease domain-containing protein At3g15140 [Jatropha curcas]
13 Hb_000676_290 0.1049634461 - - PREDICTED: glutaredoxin-C3 [Jatropha curcas]
14 Hb_001235_070 0.1051274111 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000380_010 0.1072167831 - - PREDICTED: uncharacterized protein LOC105640155 isoform X3 [Jatropha curcas]
16 Hb_004007_100 0.1181886323 - - PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas]
17 Hb_005400_030 0.118220389 - - PREDICTED: LYR motif-containing protein At3g19508 [Jatropha curcas]
18 Hb_008173_120 0.1188192038 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000061_330 0.1203161951 - - eukaryotic translation initiation factor 5A isoform VII [Hevea brasiliensis]
20 Hb_000087_020 0.1207857134 - - PREDICTED: peptidyl-tRNA hydrolase 2, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_002259_150 Hb_002259_150 Hb_007317_060 Hb_007317_060 Hb_002259_150--Hb_007317_060 Hb_002272_260 Hb_002272_260 Hb_002259_150--Hb_002272_260 Hb_102156_010 Hb_102156_010 Hb_002259_150--Hb_102156_010 Hb_100777_010 Hb_100777_010 Hb_002259_150--Hb_100777_010 Hb_004453_150 Hb_004453_150 Hb_002259_150--Hb_004453_150 Hb_000193_350 Hb_000193_350 Hb_002259_150--Hb_000193_350 Hb_000380_010 Hb_000380_010 Hb_007317_060--Hb_000380_010 Hb_008173_120 Hb_008173_120 Hb_007317_060--Hb_008173_120 Hb_000684_230 Hb_000684_230 Hb_007317_060--Hb_000684_230 Hb_000648_030 Hb_000648_030 Hb_007317_060--Hb_000648_030 Hb_003687_020 Hb_003687_020 Hb_007317_060--Hb_003687_020 Hb_000771_100 Hb_000771_100 Hb_002272_260--Hb_000771_100 Hb_002272_260--Hb_004453_150 Hb_000676_290 Hb_000676_290 Hb_002272_260--Hb_000676_290 Hb_002301_280 Hb_002301_280 Hb_002272_260--Hb_002301_280 Hb_011174_010 Hb_011174_010 Hb_002272_260--Hb_011174_010 Hb_000175_400 Hb_000175_400 Hb_102156_010--Hb_000175_400 Hb_102156_010--Hb_000193_350 Hb_000032_540 Hb_000032_540 Hb_102156_010--Hb_000032_540 Hb_102156_010--Hb_002272_260 Hb_102156_010--Hb_004453_150 Hb_000087_020 Hb_000087_020 Hb_100777_010--Hb_000087_020 Hb_001235_070 Hb_001235_070 Hb_100777_010--Hb_001235_070 Hb_000362_210 Hb_000362_210 Hb_100777_010--Hb_000362_210 Hb_000333_090 Hb_000333_090 Hb_100777_010--Hb_000333_090 Hb_001369_050 Hb_001369_050 Hb_100777_010--Hb_001369_050 Hb_015057_010 Hb_015057_010 Hb_004453_150--Hb_015057_010 Hb_011161_040 Hb_011161_040 Hb_004453_150--Hb_011161_040 Hb_025193_050 Hb_025193_050 Hb_004453_150--Hb_025193_050 Hb_007193_100 Hb_007193_100 Hb_004453_150--Hb_007193_100 Hb_000175_070 Hb_000175_070 Hb_004453_150--Hb_000175_070 Hb_000193_350--Hb_000175_400 Hb_000193_350--Hb_003687_020 Hb_005224_050 Hb_005224_050 Hb_000193_350--Hb_005224_050 Hb_000189_530 Hb_000189_530 Hb_000193_350--Hb_000189_530 Hb_017711_010 Hb_017711_010 Hb_000193_350--Hb_017711_010 Hb_011016_090 Hb_011016_090 Hb_000193_350--Hb_011016_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
45.443 12.7452 8.74734 33.7952 38.6259 163.79
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
127.798 119.528 53.5101 35.216 16.8457

CAGE analysis