Hb_008511_110

Information

Type -
Description -
Location Contig8511: 108292-108832
Sequence    

Annotation

kegg
ID pop:POPTR_0004s16220g
description POPTRDRAFT_831251; hypothetical protein
nr
ID XP_011037528.1
description PREDICTED: uncharacterized protein LOC105134715 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9H0R0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s16220g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60425: 106304-108860 , PASA_asmbl_60428: 109597-109899
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008511_110 0.0 - - PREDICTED: uncharacterized protein LOC105134715 [Populus euphratica]
2 Hb_000120_590 0.0660160984 - - PREDICTED: uncharacterized protein LOC105116418 [Populus euphratica]
3 Hb_000024_030 0.0827174406 - - PREDICTED: tetratricopeptide repeat protein 5-like [Populus euphratica]
4 Hb_000975_110 0.0859454804 - - PREDICTED: ubiquitin-conjugating enzyme E2 7 [Jatropha curcas]
5 Hb_001307_090 0.0902852818 - - hypothetical protein CISIN_1g0263261mg [Citrus sinensis]
6 Hb_005398_030 0.0973304754 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase 1-like [Jatropha curcas]
7 Hb_007735_030 0.0993016898 - - Calcium-binding EF-hand family protein isoform 1 [Theobroma cacao]
8 Hb_000787_140 0.1015454291 - - Trafficking protein particle complex subunit, putative [Ricinus communis]
9 Hb_000087_020 0.1021340443 - - PREDICTED: peptidyl-tRNA hydrolase 2, mitochondrial [Jatropha curcas]
10 Hb_001754_010 0.1047979837 - - translationally controlled tumor protein [Hevea brasiliensis]
11 Hb_000172_030 0.1049354262 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
12 Hb_000815_260 0.1051794102 - - 50S ribosomal protein L32pA [Hevea brasiliensis]
13 Hb_000722_040 0.1058990585 - - -
14 Hb_130291_010 0.1073821982 - - PREDICTED: protein PEROXIN-4 isoform X1 [Jatropha curcas]
15 Hb_046157_020 0.108420094 - - PREDICTED: uncharacterized protein LOC105647566 [Jatropha curcas]
16 Hb_007594_090 0.1092766635 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
17 Hb_148209_120 0.112000641 - - hypothetical protein CISIN_1g032846mg [Citrus sinensis]
18 Hb_009113_050 0.1140911973 - - PREDICTED: uncharacterized protein LOC105644587 [Jatropha curcas]
19 Hb_180301_010 0.1141822754 - - PREDICTED: uncharacterized protein LOC105647918 isoform X1 [Jatropha curcas]
20 Hb_004336_050 0.1146163367 - - hypothetical protein JCGZ_26651 [Jatropha curcas]

Gene co-expression network

sample Hb_008511_110 Hb_008511_110 Hb_000120_590 Hb_000120_590 Hb_008511_110--Hb_000120_590 Hb_000024_030 Hb_000024_030 Hb_008511_110--Hb_000024_030 Hb_000975_110 Hb_000975_110 Hb_008511_110--Hb_000975_110 Hb_001307_090 Hb_001307_090 Hb_008511_110--Hb_001307_090 Hb_005398_030 Hb_005398_030 Hb_008511_110--Hb_005398_030 Hb_007735_030 Hb_007735_030 Hb_008511_110--Hb_007735_030 Hb_001754_010 Hb_001754_010 Hb_000120_590--Hb_001754_010 Hb_148209_120 Hb_148209_120 Hb_000120_590--Hb_148209_120 Hb_000120_590--Hb_005398_030 Hb_001629_100 Hb_001629_100 Hb_000120_590--Hb_001629_100 Hb_130291_010 Hb_130291_010 Hb_000120_590--Hb_130291_010 Hb_000024_030--Hb_000975_110 Hb_001433_050 Hb_001433_050 Hb_000024_030--Hb_001433_050 Hb_124755_010 Hb_124755_010 Hb_000024_030--Hb_124755_010 Hb_004032_100 Hb_004032_100 Hb_000024_030--Hb_004032_100 Hb_006816_530 Hb_006816_530 Hb_000024_030--Hb_006816_530 Hb_002471_080 Hb_002471_080 Hb_000024_030--Hb_002471_080 Hb_011161_050 Hb_011161_050 Hb_000975_110--Hb_011161_050 Hb_000722_040 Hb_000722_040 Hb_000975_110--Hb_000722_040 Hb_003561_030 Hb_003561_030 Hb_000975_110--Hb_003561_030 Hb_000975_110--Hb_001307_090 Hb_000975_110--Hb_001433_050 Hb_000122_020 Hb_000122_020 Hb_001307_090--Hb_000122_020 Hb_004336_050 Hb_004336_050 Hb_001307_090--Hb_004336_050 Hb_001307_090--Hb_124755_010 Hb_001307_090--Hb_000024_030 Hb_004449_200 Hb_004449_200 Hb_001307_090--Hb_004449_200 Hb_000087_020 Hb_000087_020 Hb_005398_030--Hb_000087_020 Hb_000024_080 Hb_000024_080 Hb_005398_030--Hb_000024_080 Hb_117134_010 Hb_117134_010 Hb_005398_030--Hb_117134_010 Hb_011310_190 Hb_011310_190 Hb_005398_030--Hb_011310_190 Hb_001235_070 Hb_001235_070 Hb_005398_030--Hb_001235_070 Hb_000676_290 Hb_000676_290 Hb_005398_030--Hb_000676_290 Hb_007735_030--Hb_004032_100 Hb_000707_030 Hb_000707_030 Hb_007735_030--Hb_000707_030 Hb_005400_030 Hb_005400_030 Hb_007735_030--Hb_005400_030 Hb_002296_040 Hb_002296_040 Hb_007735_030--Hb_002296_040 Hb_180301_010 Hb_180301_010 Hb_007735_030--Hb_180301_010 Hb_007735_030--Hb_000024_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
44.2625 15.5919 11.9552 51.3348 32.6091 94.3513
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
153.954 110.983 78.3507 56.9005 13.125

CAGE analysis