Hb_000684_160

Information

Type -
Description -
Location Contig684: 203360-203770
Sequence    

Annotation

kegg
ID rcu:RCOM_0819420
description dolichyldiphosphatase, putative (EC:3.6.1.43)
nr
ID XP_012082307.1
description PREDICTED: lipid phosphate phosphatase gamma, chloroplastic [Jatropha curcas]
swissprot
ID Q6NLA5
description Lipid phosphate phosphatase gamma, chloroplastic OS=Arabidopsis thaliana GN=LPPG PE=1 SV=1
trembl
ID A0A067KB90
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16478 PE=4 SV=1
Gene Ontology
ID GO:0009507
description lipid phosphate phosphatase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53974: 191045-204209
cDNA
(Sanger)
(ID:Location)		 001_I04.ab1: 203386-204208 , 025_M24.ab1: 203372-204209 , 037_M13.ab1: 203391-204210 , 038_B17.ab1: 203407-204208 , 047_F22.ab1: 203406-204208

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000684_160 0.0 - - PREDICTED: lipid phosphate phosphatase gamma, chloroplastic [Jatropha curcas]
2 Hb_012395_200 0.1219586002 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003349_070 0.1252745558 - - PREDICTED: signal recognition particle 14 kDa protein [Gossypium raimondii]
4 Hb_007810_030 0.1270442324 - - PREDICTED: uncharacterized protein LOC105647693 [Jatropha curcas]
5 Hb_103752_010 0.1271682914 - - PREDICTED: uncharacterized protein At5g39865-like [Jatropha curcas]
6 Hb_001008_010 0.1296243563 - - PREDICTED: 30S ribosomal protein S17, chloroplastic-like [Populus euphratica]
7 Hb_011245_020 0.1364606015 - - Ferrochelatase [Medicago truncatula]
8 Hb_034585_050 0.1382697 - - -
9 Hb_000078_010 0.1407107272 - - hypothetical protein POPTR_0006s06510g, partial [Populus trichocarpa]
10 Hb_001723_080 0.1426734792 - - hypothetical protein L484_026139 [Morus notabilis]
11 Hb_004041_040 0.1430403949 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM14-1 [Camelina sativa]
12 Hb_007520_060 0.1475906058 - - PREDICTED: putative exosome complex component rrp40 [Jatropha curcas]
13 Hb_000367_280 0.1485195323 - - PREDICTED: flavin-containing monooxygenase FMO GS-OX-like 9 [Jatropha curcas]
14 Hb_002660_160 0.1489635718 - - protein binding protein, putative [Ricinus communis]
15 Hb_001473_120 0.1505759841 - - Uncharacterized protein isoform 1 [Theobroma cacao]
16 Hb_003043_120 0.1530668466 - - conserved hypothetical protein [Ricinus communis]
17 Hb_034585_040 0.1531746893 - - PREDICTED: nuclear pore complex protein NUP58 [Jatropha curcas]
18 Hb_001369_400 0.1534316376 - - PREDICTED: uncharacterized protein LOC105648609 [Jatropha curcas]
19 Hb_116264_010 0.1535593563 - - hypothetical protein JCGZ_05585 [Jatropha curcas]
20 Hb_000567_170 0.1554741285 - - PREDICTED: putative lipase YDR444W isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000684_160 Hb_000684_160 Hb_012395_200 Hb_012395_200 Hb_000684_160--Hb_012395_200 Hb_003349_070 Hb_003349_070 Hb_000684_160--Hb_003349_070 Hb_007810_030 Hb_007810_030 Hb_000684_160--Hb_007810_030 Hb_103752_010 Hb_103752_010 Hb_000684_160--Hb_103752_010 Hb_001008_010 Hb_001008_010 Hb_000684_160--Hb_001008_010 Hb_011245_020 Hb_011245_020 Hb_000684_160--Hb_011245_020 Hb_012395_200--Hb_001008_010 Hb_000078_010 Hb_000078_010 Hb_012395_200--Hb_000078_010 Hb_001723_080 Hb_001723_080 Hb_012395_200--Hb_001723_080 Hb_012395_200--Hb_007810_030 Hb_074590_010 Hb_074590_010 Hb_012395_200--Hb_074590_010 Hb_001623_430 Hb_001623_430 Hb_003349_070--Hb_001623_430 Hb_004223_260 Hb_004223_260 Hb_003349_070--Hb_004223_260 Hb_000106_100 Hb_000106_100 Hb_003349_070--Hb_000106_100 Hb_000819_070 Hb_000819_070 Hb_003349_070--Hb_000819_070 Hb_000085_330 Hb_000085_330 Hb_003349_070--Hb_000085_330 Hb_183086_040 Hb_183086_040 Hb_003349_070--Hb_183086_040 Hb_015934_020 Hb_015934_020 Hb_007810_030--Hb_015934_020 Hb_007810_030--Hb_000078_010 Hb_000367_280 Hb_000367_280 Hb_007810_030--Hb_000367_280 Hb_007810_030--Hb_011245_020 Hb_001213_120 Hb_001213_120 Hb_007810_030--Hb_001213_120 Hb_000032_220 Hb_000032_220 Hb_007810_030--Hb_000032_220 Hb_005137_020 Hb_005137_020 Hb_103752_010--Hb_005137_020 Hb_149683_010 Hb_149683_010 Hb_103752_010--Hb_149683_010 Hb_078633_010 Hb_078633_010 Hb_103752_010--Hb_078633_010 Hb_004297_040 Hb_004297_040 Hb_103752_010--Hb_004297_040 Hb_006816_440 Hb_006816_440 Hb_103752_010--Hb_006816_440 Hb_001629_100 Hb_001629_100 Hb_001008_010--Hb_001629_100 Hb_001173_040 Hb_001173_040 Hb_001008_010--Hb_001173_040 Hb_012265_010 Hb_012265_010 Hb_001008_010--Hb_012265_010 Hb_010172_030 Hb_010172_030 Hb_001008_010--Hb_010172_030 Hb_002539_090 Hb_002539_090 Hb_001008_010--Hb_002539_090 Hb_001754_010 Hb_001754_010 Hb_001008_010--Hb_001754_010 Hb_003043_120 Hb_003043_120 Hb_011245_020--Hb_003043_120 Hb_006831_030 Hb_006831_030 Hb_011245_020--Hb_006831_030 Hb_011245_020--Hb_000367_280 Hb_001268_080 Hb_001268_080 Hb_011245_020--Hb_001268_080 Hb_017862_010 Hb_017862_010 Hb_011245_020--Hb_017862_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
156.654 10.2453 11.9422 49.3728 141.741 490.057
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
922.297 1103.8 608.379 66.4849 81.4631

CAGE analysis