Hb_003043_120

Information

Type -
Description -
Location Contig3043: 112837-114094
Sequence    

Annotation

kegg
ID rcu:RCOM_1691000
description hypothetical protein
nr
ID XP_002509919.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RCN5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1691000 PE=4 SV=1
Gene Ontology
ID GO:0005739
description cox19-like chch family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32096: 112809-114128
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003043_120 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_011245_020 0.0707175938 - - Ferrochelatase [Medicago truncatula]
3 Hb_017862_010 0.0916004463 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
4 Hb_001102_250 0.106824861 - - PREDICTED: E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X1 [Jatropha curcas]
5 Hb_006831_030 0.109477246 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
6 Hb_034585_050 0.1098665384 - - -
7 Hb_000069_100 0.1101176919 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002603_150 0.1103389276 - - PREDICTED: protein yippee-like [Jatropha curcas]
9 Hb_000367_280 0.1134213038 - - PREDICTED: flavin-containing monooxygenase FMO GS-OX-like 9 [Jatropha curcas]
10 Hb_001268_080 0.1145803091 - - catalytic, putative [Ricinus communis]
11 Hb_003929_120 0.1175064974 - - PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Jatropha curcas]
12 Hb_005841_040 0.1179446397 - - stress-induced hydrophobic peptide 1 [Hevea brasiliensis]
13 Hb_004041_040 0.1212185492 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM14-1 [Camelina sativa]
14 Hb_001935_030 0.1277581705 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001785_040 0.1284235096 - - cytochrome b5 isoform Cb5-A [Vernicia fordii]
16 Hb_001575_020 0.1285335726 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001123_120 0.1319822214 - - Uncharacterized protein TCM_042776 [Theobroma cacao]
18 Hb_005841_050 0.1320981297 - - PREDICTED: F-box protein SKIP1-like [Jatropha curcas]
19 Hb_002045_230 0.1333834026 - - Ammonium transporter 2 [Theobroma cacao]
20 Hb_001159_200 0.1343265784 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_003043_120 Hb_003043_120 Hb_011245_020 Hb_011245_020 Hb_003043_120--Hb_011245_020 Hb_017862_010 Hb_017862_010 Hb_003043_120--Hb_017862_010 Hb_001102_250 Hb_001102_250 Hb_003043_120--Hb_001102_250 Hb_006831_030 Hb_006831_030 Hb_003043_120--Hb_006831_030 Hb_034585_050 Hb_034585_050 Hb_003043_120--Hb_034585_050 Hb_000069_100 Hb_000069_100 Hb_003043_120--Hb_000069_100 Hb_011245_020--Hb_006831_030 Hb_000367_280 Hb_000367_280 Hb_011245_020--Hb_000367_280 Hb_001268_080 Hb_001268_080 Hb_011245_020--Hb_001268_080 Hb_007810_030 Hb_007810_030 Hb_011245_020--Hb_007810_030 Hb_011245_020--Hb_017862_010 Hb_002603_150 Hb_002603_150 Hb_017862_010--Hb_002603_150 Hb_017862_010--Hb_000069_100 Hb_001123_120 Hb_001123_120 Hb_017862_010--Hb_001123_120 Hb_000212_260 Hb_000212_260 Hb_017862_010--Hb_000212_260 Hb_017862_010--Hb_006831_030 Hb_000224_090 Hb_000224_090 Hb_017862_010--Hb_000224_090 Hb_072912_020 Hb_072912_020 Hb_001102_250--Hb_072912_020 Hb_003095_070 Hb_003095_070 Hb_001102_250--Hb_003095_070 Hb_000544_110 Hb_000544_110 Hb_001102_250--Hb_000544_110 Hb_005841_040 Hb_005841_040 Hb_001102_250--Hb_005841_040 Hb_005137_020 Hb_005137_020 Hb_001102_250--Hb_005137_020 Hb_004297_040 Hb_004297_040 Hb_001102_250--Hb_004297_040 Hb_006831_030--Hb_000069_100 Hb_000398_160 Hb_000398_160 Hb_006831_030--Hb_000398_160 Hb_001935_030 Hb_001935_030 Hb_006831_030--Hb_001935_030 Hb_006831_030--Hb_001268_080 Hb_001006_180 Hb_001006_180 Hb_006831_030--Hb_001006_180 Hb_002918_140 Hb_002918_140 Hb_034585_050--Hb_002918_140 Hb_006738_010 Hb_006738_010 Hb_034585_050--Hb_006738_010 Hb_010594_030 Hb_010594_030 Hb_034585_050--Hb_010594_030 Hb_034585_050--Hb_011245_020 Hb_034585_050--Hb_017862_010 Hb_002097_060 Hb_002097_060 Hb_000069_100--Hb_002097_060 Hb_000329_330 Hb_000329_330 Hb_000069_100--Hb_000329_330 Hb_001616_060 Hb_001616_060 Hb_000069_100--Hb_001616_060 Hb_000069_100--Hb_000212_260 Hb_006573_220 Hb_006573_220 Hb_000069_100--Hb_006573_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.7845 1.13646 8.40831 6.77384 15.3273 32.2796
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
83.9625 137.517 88.5031 19.2771 10.8482

CAGE analysis