Hb_003095_070

Information

Type -
Description -
Location Contig3095: 56720-56977
Sequence    

Annotation

kegg
ID pop:POPTR_0009s11230g
description POPTRDRAFT_649489; hypothetical protein
nr
ID XP_002313828.2
description hypothetical protein POPTR_0009s11230g [Populus trichocarpa]
swissprot
ID Q6CMG4
description Diphthamide biosynthesis protein 3 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=DPH3 PE=3 SV=1
trembl
ID B9HRU5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s11230g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32701: 56533-57352
cDNA
(Sanger)
(ID:Location)		 002_A23.ab1: 56552-57259 , 006_P18.ab1: 56682-57341 , 008_N17.ab1: 56582-57260 , 012_L01.ab1: 56583-57330 , 018_G22.ab1: 56582-57275 , 021_J01.ab1: 56583-57347 , 024_O04.ab1: 56656-57241 , 027_F19.ab1: 56615-57312 , 031_A08.ab1: 56583-57326 , 031_O11.ab1: 56583-57234 , 033_L04.ab1: 56583-57150 , 034_A07.ab1: 56662-57236 , 039_F03.ab1: 56583-57338 , 040_N17.ab1: 56654-57241 , 045_L06.ab1: 56583-57345 , 046_G18.ab1: 56583-57354 , 047_M18.ab1: 56552-57259 , 050_P02.ab1: 56582-57312 , 051_O20.ab1: 56587-57272

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003095_070 0.0 - - hypothetical protein POPTR_0009s11230g [Populus trichocarpa]
2 Hb_001102_250 0.0974950308 - - PREDICTED: E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X1 [Jatropha curcas]
3 Hb_001276_060 0.1018368428 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
4 Hb_000788_080 0.1159519822 - - PREDICTED: uncharacterized protein LOC105629703 isoform X1 [Jatropha curcas]
5 Hb_005908_040 0.1170115623 - - hypothetical protein POPTR_0017s06850g [Populus trichocarpa]
6 Hb_011671_400 0.1198866477 - - PREDICTED: cyclin-U4-1 [Jatropha curcas]
7 Hb_072912_020 0.1202447256 - - abhydrolase domain containing, putative [Ricinus communis]
8 Hb_003211_050 0.1305357167 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
9 Hb_000103_550 0.1322282294 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 2 isoform X1 [Jatropha curcas]
10 Hb_006351_110 0.1369141291 - - -
11 Hb_009838_040 0.1406708945 - - hypothetical protein JCGZ_12866 [Jatropha curcas]
12 Hb_004297_040 0.1438288806 - - acyl CoA reductase [Hevea brasiliensis]
13 Hb_005137_020 0.1443985615 - - PREDICTED: uncharacterized protein LOC101759641 [Setaria italica]
14 Hb_000316_100 0.1461267809 - - protein with unknown function [Ricinus communis]
15 Hb_005000_160 0.1478567253 - - PREDICTED: uncharacterized protein LOC105637882 [Jatropha curcas]
16 Hb_000059_350 0.1481186285 - - glutamate dehydrogenase, putative [Ricinus communis]
17 Hb_005841_040 0.1489195662 - - stress-induced hydrophobic peptide 1 [Hevea brasiliensis]
18 Hb_012395_210 0.1504843277 - - conserved hypothetical protein [Ricinus communis]
19 Hb_010172_100 0.1514756542 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Populus euphratica]
20 Hb_000367_280 0.1529004098 - - PREDICTED: flavin-containing monooxygenase FMO GS-OX-like 9 [Jatropha curcas]

Gene co-expression network

sample Hb_003095_070 Hb_003095_070 Hb_001102_250 Hb_001102_250 Hb_003095_070--Hb_001102_250 Hb_001276_060 Hb_001276_060 Hb_003095_070--Hb_001276_060 Hb_000788_080 Hb_000788_080 Hb_003095_070--Hb_000788_080 Hb_005908_040 Hb_005908_040 Hb_003095_070--Hb_005908_040 Hb_011671_400 Hb_011671_400 Hb_003095_070--Hb_011671_400 Hb_072912_020 Hb_072912_020 Hb_003095_070--Hb_072912_020 Hb_001102_250--Hb_072912_020 Hb_000544_110 Hb_000544_110 Hb_001102_250--Hb_000544_110 Hb_005841_040 Hb_005841_040 Hb_001102_250--Hb_005841_040 Hb_005137_020 Hb_005137_020 Hb_001102_250--Hb_005137_020 Hb_004297_040 Hb_004297_040 Hb_001102_250--Hb_004297_040 Hb_001276_060--Hb_011671_400 Hb_003211_050 Hb_003211_050 Hb_001276_060--Hb_003211_050 Hb_005000_160 Hb_005000_160 Hb_001276_060--Hb_005000_160 Hb_001276_060--Hb_000788_080 Hb_009838_040 Hb_009838_040 Hb_001276_060--Hb_009838_040 Hb_000788_080--Hb_005000_160 Hb_001511_140 Hb_001511_140 Hb_000788_080--Hb_001511_140 Hb_000613_160 Hb_000613_160 Hb_000788_080--Hb_000613_160 Hb_001159_200 Hb_001159_200 Hb_000788_080--Hb_001159_200 Hb_000788_080--Hb_009838_040 Hb_005908_040--Hb_005137_020 Hb_010172_100 Hb_010172_100 Hb_005908_040--Hb_010172_100 Hb_005908_040--Hb_001102_250 Hb_005908_040--Hb_004297_040 Hb_005908_040--Hb_000544_110 Hb_078633_010 Hb_078633_010 Hb_011671_400--Hb_078633_010 Hb_002260_090 Hb_002260_090 Hb_011671_400--Hb_002260_090 Hb_003052_040 Hb_003052_040 Hb_011671_400--Hb_003052_040 Hb_011671_400--Hb_005000_160 Hb_072912_020--Hb_000544_110 Hb_072912_020--Hb_005137_020 Hb_072912_020--Hb_078633_010 Hb_072912_020--Hb_004297_040 Hb_001268_080 Hb_001268_080 Hb_072912_020--Hb_001268_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
526.086 44.8531 21.7314 74.6823 245.139 280.848
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2255.55 4083.98 2403.4 191.522 35.1613

CAGE analysis