Hb_011671_400

Information

Type -
Description -
Location Contig11671: 310522-312298
Sequence    

Annotation

kegg
ID pop:POPTR_0296s00210g
description hypothetical protein
nr
ID XP_012090519.1
description PREDICTED: cyclin-U4-1 [Jatropha curcas]
swissprot
ID O80513
description Cyclin-U4-1 OS=Arabidopsis thaliana GN=CYCU4-1 PE=1 SV=1
trembl
ID A0A067JI41
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26314 PE=4 SV=1
Gene Ontology
ID GO:0016301
description cyclin-dependent protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05179: 310527-312257
cDNA
(Sanger)
(ID:Location)		 005_K09.ab1: 310529-312008 , 010_B21.ab1: 310539-311910 , 018_K07.ab1: 310529-312039 , 023_K22.ab1: 310539-312017

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011671_400 0.0 - - PREDICTED: cyclin-U4-1 [Jatropha curcas]
2 Hb_001276_060 0.1051062283 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
3 Hb_078633_010 0.1157047947 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
4 Hb_002260_090 0.1198360073 - - PREDICTED: uncharacterized protein LOC105636025 isoform X1 [Jatropha curcas]
5 Hb_003095_070 0.1198866477 - - hypothetical protein POPTR_0009s11230g [Populus trichocarpa]
6 Hb_003052_040 0.1208257449 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005000_160 0.1219382631 - - PREDICTED: uncharacterized protein LOC105637882 [Jatropha curcas]
8 Hb_003211_050 0.1242469073 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
9 Hb_001102_250 0.1281067788 - - PREDICTED: E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X1 [Jatropha curcas]
10 Hb_001213_120 0.1355345974 - - PREDICTED: immediate early response 3-interacting protein 1-like [Brassica rapa]
11 Hb_005908_040 0.1355550506 - - hypothetical protein POPTR_0017s06850g [Populus trichocarpa]
12 Hb_072912_020 0.1378161414 - - abhydrolase domain containing, putative [Ricinus communis]
13 Hb_001268_080 0.1390784922 - - catalytic, putative [Ricinus communis]
14 Hb_000250_010 0.1434009084 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
15 Hb_004297_040 0.1467995369 - - acyl CoA reductase [Hevea brasiliensis]
16 Hb_000367_280 0.1472653621 - - PREDICTED: flavin-containing monooxygenase FMO GS-OX-like 9 [Jatropha curcas]
17 Hb_003371_100 0.1474455218 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
18 Hb_000544_110 0.1474603313 - - PREDICTED: probable calcium-binding protein CML27 [Jatropha curcas]
19 Hb_008864_060 0.1490787614 - - PREDICTED: uncharacterized protein LOC105634361 [Jatropha curcas]
20 Hb_002099_050 0.1497986933 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_011671_400 Hb_011671_400 Hb_001276_060 Hb_001276_060 Hb_011671_400--Hb_001276_060 Hb_078633_010 Hb_078633_010 Hb_011671_400--Hb_078633_010 Hb_002260_090 Hb_002260_090 Hb_011671_400--Hb_002260_090 Hb_003095_070 Hb_003095_070 Hb_011671_400--Hb_003095_070 Hb_003052_040 Hb_003052_040 Hb_011671_400--Hb_003052_040 Hb_005000_160 Hb_005000_160 Hb_011671_400--Hb_005000_160 Hb_001276_060--Hb_003095_070 Hb_003211_050 Hb_003211_050 Hb_001276_060--Hb_003211_050 Hb_001276_060--Hb_005000_160 Hb_000788_080 Hb_000788_080 Hb_001276_060--Hb_000788_080 Hb_009838_040 Hb_009838_040 Hb_001276_060--Hb_009838_040 Hb_001268_080 Hb_001268_080 Hb_078633_010--Hb_001268_080 Hb_072912_020 Hb_072912_020 Hb_078633_010--Hb_072912_020 Hb_005137_020 Hb_005137_020 Hb_078633_010--Hb_005137_020 Hb_001213_120 Hb_001213_120 Hb_078633_010--Hb_001213_120 Hb_000367_280 Hb_000367_280 Hb_078633_010--Hb_000367_280 Hb_000544_110 Hb_000544_110 Hb_078633_010--Hb_000544_110 Hb_014497_110 Hb_014497_110 Hb_002260_090--Hb_014497_110 Hb_002260_090--Hb_001213_120 Hb_002260_090--Hb_003052_040 Hb_012366_020 Hb_012366_020 Hb_002260_090--Hb_012366_020 Hb_005908_040 Hb_005908_040 Hb_002260_090--Hb_005908_040 Hb_001102_250 Hb_001102_250 Hb_003095_070--Hb_001102_250 Hb_003095_070--Hb_000788_080 Hb_003095_070--Hb_005908_040 Hb_003095_070--Hb_072912_020 Hb_001396_190 Hb_001396_190 Hb_003052_040--Hb_001396_190 Hb_005914_070 Hb_005914_070 Hb_003052_040--Hb_005914_070 Hb_003052_040--Hb_078633_010 Hb_003052_040--Hb_014497_110 Hb_003371_100 Hb_003371_100 Hb_005000_160--Hb_003371_100 Hb_005000_160--Hb_000788_080 Hb_005000_160--Hb_009838_040 Hb_000613_160 Hb_000613_160 Hb_005000_160--Hb_000613_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
126.486 4.58376 4.25099 8.12428 26.4244 24.8491
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
323.016 365.297 298.191 17.6283 1.76952

CAGE analysis