Hb_014497_110

Information

Type -
Description -
Location Contig14497: 90007-90873
Sequence    

Annotation

kegg
ID rcu:RCOM_1602220
description DNA binding protein, putative
nr
ID XP_012073562.1
description PREDICTED: AT-hook motif nuclear-localized protein 25-like [Jatropha curcas]
swissprot
ID Q9C9K7
description AT-hook motif nuclear-localized protein 29 OS=Arabidopsis thaliana GN=AHL29 PE=1 SV=1
trembl
ID A0A067KKW8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08028 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11705: 89670-91730
cDNA
(Sanger)
(ID:Location)		 024_D23.ab1: 91034-91730 , 037_B24.ab1: 90968-91688

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014497_110 0.0 - - PREDICTED: AT-hook motif nuclear-localized protein 25-like [Jatropha curcas]
2 Hb_002260_090 0.106381176 - - PREDICTED: uncharacterized protein LOC105636025 isoform X1 [Jatropha curcas]
3 Hb_001213_120 0.141504932 - - PREDICTED: immediate early response 3-interacting protein 1-like [Brassica rapa]
4 Hb_012366_020 0.1467240684 - - unnamed protein product [Vitis vinifera]
5 Hb_001012_040 0.1468746195 - - PREDICTED: MADS-box transcription factor 23-like isoform X2 [Jatropha curcas]
6 Hb_002983_030 0.1496327448 desease resistance Gene Name: NB-ARC hypothetical protein CISIN_1g046124mg, partial [Citrus sinensis]
7 Hb_003052_040 0.1547690368 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001279_130 0.1582281999 - - hypothetical protein L484_017676 [Morus notabilis]
9 Hb_009974_030 0.1605378654 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18390, mitochondrial-like [Jatropha curcas]
10 Hb_002936_050 0.1655607322 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR18 isoform X2 [Jatropha curcas]
11 Hb_001278_050 0.1670977709 - - PREDICTED: uncharacterized protein LOC105636924 [Jatropha curcas]
12 Hb_005000_160 0.1694807732 - - PREDICTED: uncharacterized protein LOC105637882 [Jatropha curcas]
13 Hb_042729_010 0.1697775478 - - -
14 Hb_001143_090 0.1701342177 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 6 [Jatropha curcas]
15 Hb_000367_280 0.1721696312 - - PREDICTED: flavin-containing monooxygenase FMO GS-OX-like 9 [Jatropha curcas]
16 Hb_010594_030 0.1724912921 - - -
17 Hb_006594_020 0.1726346939 - - PREDICTED: uncharacterized protein LOC105138974 isoform X1 [Populus euphratica]
18 Hb_001232_130 0.1733982117 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1-like [Jatropha curcas]
19 Hb_011671_400 0.1764046194 - - PREDICTED: cyclin-U4-1 [Jatropha curcas]
20 Hb_005914_070 0.1771127488 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_014497_110 Hb_014497_110 Hb_002260_090 Hb_002260_090 Hb_014497_110--Hb_002260_090 Hb_001213_120 Hb_001213_120 Hb_014497_110--Hb_001213_120 Hb_012366_020 Hb_012366_020 Hb_014497_110--Hb_012366_020 Hb_001012_040 Hb_001012_040 Hb_014497_110--Hb_001012_040 Hb_002983_030 Hb_002983_030 Hb_014497_110--Hb_002983_030 Hb_003052_040 Hb_003052_040 Hb_014497_110--Hb_003052_040 Hb_002260_090--Hb_001213_120 Hb_011671_400 Hb_011671_400 Hb_002260_090--Hb_011671_400 Hb_002260_090--Hb_003052_040 Hb_002260_090--Hb_012366_020 Hb_005908_040 Hb_005908_040 Hb_002260_090--Hb_005908_040 Hb_000367_280 Hb_000367_280 Hb_001213_120--Hb_000367_280 Hb_001268_080 Hb_001268_080 Hb_001213_120--Hb_001268_080 Hb_078633_010 Hb_078633_010 Hb_001213_120--Hb_078633_010 Hb_004297_040 Hb_004297_040 Hb_001213_120--Hb_004297_040 Hb_015934_020 Hb_015934_020 Hb_001213_120--Hb_015934_020 Hb_007810_030 Hb_007810_030 Hb_001213_120--Hb_007810_030 Hb_030765_020 Hb_030765_020 Hb_012366_020--Hb_030765_020 Hb_000003_840 Hb_000003_840 Hb_012366_020--Hb_000003_840 Hb_002936_050 Hb_002936_050 Hb_012366_020--Hb_002936_050 Hb_000836_500 Hb_000836_500 Hb_012366_020--Hb_000836_500 Hb_000178_110 Hb_000178_110 Hb_012366_020--Hb_000178_110 Hb_001723_080 Hb_001723_080 Hb_001012_040--Hb_001723_080 Hb_000454_110 Hb_000454_110 Hb_001012_040--Hb_000454_110 Hb_012395_210 Hb_012395_210 Hb_001012_040--Hb_012395_210 Hb_004206_030 Hb_004206_030 Hb_001012_040--Hb_004206_030 Hb_005539_210 Hb_005539_210 Hb_001012_040--Hb_005539_210 Hb_001012_040--Hb_001213_120 Hb_004453_140 Hb_004453_140 Hb_002983_030--Hb_004453_140 Hb_000193_240 Hb_000193_240 Hb_002983_030--Hb_000193_240 Hb_003060_030 Hb_003060_030 Hb_002983_030--Hb_003060_030 Hb_096225_020 Hb_096225_020 Hb_002983_030--Hb_096225_020 Hb_001143_090 Hb_001143_090 Hb_002983_030--Hb_001143_090 Hb_003052_040--Hb_011671_400 Hb_001396_190 Hb_001396_190 Hb_003052_040--Hb_001396_190 Hb_005914_070 Hb_005914_070 Hb_003052_040--Hb_005914_070 Hb_003052_040--Hb_078633_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
82.3524 32.923 0.591422 0.569997 23.6536 41.4158
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
152.632 216.936 228.72 29.7906 0.966041

CAGE analysis