Hb_000178_110

Information

Type -
Description -
Location Contig178: 246977-248043
Sequence    

Annotation

kegg
ID rcu:RCOM_1202340
description hypothetical protein
nr
ID XP_002531334.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SZB5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1202340 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17099: 246929-248418
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000178_110 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000836_500 0.0940180965 - - Late embryogenesis abundant protein Lea14-A, putative [Ricinus communis]
3 Hb_029584_140 0.1135756443 - - senescence-associated family protein [Populus trichocarpa]
4 Hb_007120_070 0.1136409566 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
5 Hb_012725_110 0.1156563215 - - hypothetical protein JCGZ_09397 [Jatropha curcas]
6 Hb_012799_060 0.1189398706 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
7 Hb_000580_170 0.1223235437 - - PREDICTED: arginase 1, mitochondrial [Jatropha curcas]
8 Hb_030765_020 0.1268210032 - - ABC transporter family protein [Hevea brasiliensis]
9 Hb_003540_230 0.1364523544 - - PREDICTED: sphingosine kinase 1 isoform X1 [Jatropha curcas]
10 Hb_002235_230 0.13829473 - - latex abundant protein 1 [Hevea brasiliensis]
11 Hb_006816_440 0.1383452885 - - protein phosphatase 2c, putative [Ricinus communis]
12 Hb_003020_310 0.139086075 - - glycosyltransferase, putative [Ricinus communis]
13 Hb_004206_030 0.1413794716 - - PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
14 Hb_001741_080 0.1420320562 rubber biosynthesis Gene Name: REF8 small rubber particle protein [Hevea brasiliensis]
15 Hb_000041_070 0.1443232836 - - hypothetical protein POPTR_0001s34870g [Populus trichocarpa]
16 Hb_002291_030 0.1443632378 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]
17 Hb_005615_070 0.1450063442 - - Rab7 [Hevea brasiliensis]
18 Hb_012366_020 0.1459217428 - - unnamed protein product [Vitis vinifera]
19 Hb_149683_010 0.1464205611 rubber biosynthesis Gene Name: REF2 RecName: Full=Rubber elongation factor protein; Short=REF; AltName: Allergen=Hev b 1 [Hevea brasiliensis]
20 Hb_002685_090 0.1470548219 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0004s04590g [Populus trichocarpa]

Gene co-expression network

sample Hb_000178_110 Hb_000178_110 Hb_000836_500 Hb_000836_500 Hb_000178_110--Hb_000836_500 Hb_029584_140 Hb_029584_140 Hb_000178_110--Hb_029584_140 Hb_007120_070 Hb_007120_070 Hb_000178_110--Hb_007120_070 Hb_012725_110 Hb_012725_110 Hb_000178_110--Hb_012725_110 Hb_012799_060 Hb_012799_060 Hb_000178_110--Hb_012799_060 Hb_000580_170 Hb_000580_170 Hb_000178_110--Hb_000580_170 Hb_000836_500--Hb_012725_110 Hb_002291_030 Hb_002291_030 Hb_000836_500--Hb_002291_030 Hb_002928_110 Hb_002928_110 Hb_000836_500--Hb_002928_110 Hb_000836_500--Hb_029584_140 Hb_002936_050 Hb_002936_050 Hb_000836_500--Hb_002936_050 Hb_003540_230 Hb_003540_230 Hb_029584_140--Hb_003540_230 Hb_003038_180 Hb_003038_180 Hb_029584_140--Hb_003038_180 Hb_029584_140--Hb_012799_060 Hb_029584_140--Hb_000580_170 Hb_029584_140--Hb_007120_070 Hb_030765_020 Hb_030765_020 Hb_029584_140--Hb_030765_020 Hb_003020_310 Hb_003020_310 Hb_007120_070--Hb_003020_310 Hb_007120_070--Hb_003038_180 Hb_000062_580 Hb_000062_580 Hb_007120_070--Hb_000062_580 Hb_001035_040 Hb_001035_040 Hb_007120_070--Hb_001035_040 Hb_004206_030 Hb_004206_030 Hb_012725_110--Hb_004206_030 Hb_002387_060 Hb_002387_060 Hb_012725_110--Hb_002387_060 Hb_002685_090 Hb_002685_090 Hb_012725_110--Hb_002685_090 Hb_000041_070 Hb_000041_070 Hb_012725_110--Hb_000041_070 Hb_012725_110--Hb_002291_030 Hb_012799_060--Hb_000580_170 Hb_000078_030 Hb_000078_030 Hb_012799_060--Hb_000078_030 Hb_001741_080 Hb_001741_080 Hb_012799_060--Hb_001741_080 Hb_012799_060--Hb_030765_020 Hb_005016_130 Hb_005016_130 Hb_012799_060--Hb_005016_130 Hb_012799_060--Hb_003540_230 Hb_000580_170--Hb_000078_030 Hb_000580_170--Hb_001741_080 Hb_000580_170--Hb_003540_230 Hb_000580_170--Hb_005016_130 Hb_001102_010 Hb_001102_010 Hb_000580_170--Hb_001102_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
357.902 9.31411 3.65284 8.66114 131.209 84.9301
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
471.257 328.987 356.819 15.5029 4.10606

CAGE analysis