Hb_001741_080

Information

Type rubber biosynthesis
Description Gene Name: REF8
Location Contig1741: 73342-75248
Sequence    

Annotation

kegg
ID -
description -
nr
ID AAO66432.1
description small rubber particle protein [Hevea brasiliensis]
swissprot
ID -
description -
trembl
ID Q84T88
description REF-like stress related protein 2 OS=Hevea brasiliensis GN=SRPP PE=2 SV=1
Gene Ontology
ID GO:0005737
description small rubber particle protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16589: 73435-75427 , PASA_asmbl_16590: 25601-75427 , PASA_asmbl_16591: 73582-75427
cDNA
(Sanger)
(ID:Location)		 001_D09.ab1: 73582-75151 , 001_G21.ab1: 73582-75165 , 001_J12.ab1: 73581-75237 , 005_F23.ab1: 73582-75158 , 006_B16.ab1: 60081-75089 , 006_B22.ab1: 73582-75132 , 006_G04.ab1: 73582-75191 , 006_I17.ab1: 73581-75182 , 006_M11.ab1: 73582-75152 , 007_F04.ab1: 73582-75211 , 007_F21.ab1: 73581-75153 , 007_H19.ab1: 73582-75177 , 007_N13.ab1: 73581-75251 , 007_O05.ab1: 73445-75052 , 008_K14.ab1: 73582-75071 , 009_H12.ab1: 73581-75180 , 009_P11.ab1: 73582-75177 , 010_A07.ab1: 73582-75217 , 010_A18.ab1: 73582-74953 , 010_D17.ab1: 73581-75168 , 011_A23.ab1: 73582-75152 , 011_B16.ab1: 73582-75176 , 012_B23.ab1: 73586-74922 , 012_D09.ab1: 73581-75107 , 012_K01.ab1: 73581-75176 , 013_K13.ab1: 73581-75124 , 014_H06.ab1: 73456-75069 , 015_B20.ab1: 73582-75082 , 016_C09.ab1: 73581-75176 , 017_E17.ab1: 73581-75024 , 017_P01.ab1: 73582-75020 , 017_P11.ab1: 73581-75129 , 018_H24.ab1: 73583-75078 , 019_A09.ab1: 73582-75193 , 021_C02.ab1: 73581-75212 , 021_L02.ab1: 73586-75161 , 022_G09.ab1: 73588-74445 , 022_N20.ab1: 73456-75037 , 022_O06.ab1: 73585-74989 , 023_I06.ab1: 73582-75149 , 024_N18.ab1: 73581-75081 , 024_O16.ab1: 73585-74933 , 025_H12.ab1: 73582-75153 , 025_O18.ab1: 73582-75208 , 026_O02.ab1: 73582-75161 , 027_N12.ab1: 73582-75130 , 027_P16.ab1: 73582-75177 , 029_G08.ab1: 73582-75038 , 030_F08.ab1: 73582-75176 , 030_N09.ab1: 73579-75130 , 032_H03.ab1: 73582-75042 , 032_H07.ab1: 73582-75110 , 033_H07.ab1: 73635-75021 , 033_K18.ab1: 73581-75065 , 033_M07.ab1: 73582-74910 , 033_O20.ab1: 74843-75238 , 034_F03.ab1: 73578-75176 , 034_H07.ab1: 73573-75151 , 034_I24.ab1: 73582-75210 , 037_C06.ab1: 73582-75176 , 038_F05.ab1: 73581-75176 , 038_O17.ab1: 73582-75072 , 039_A22.ab1: 73581-75166 , 039_H04.ab1: 60081-75192 , 040_L01.ab1: 60081-75133 , 042_N08.ab1: 73582-75134 , 044_I16.ab1: 73581-75250 , 044_K23.ab1: 73581-75163 , 044_O09.ab1: 73582-75067 , 045_G02.ab1: 73579-75108 , 046_B03.ab1: 73582-75147 , 046_O01.ab1: 73581-75019 , 047_A21.ab1: 73581-75152 , 048_C01.ab1: 73581-75220 , 048_K03.ab1: 73582-75217 , 048_K06.ab1: 73582-75158 , 048_K09.ab1: 73581-75178 , 048_L15.ab1: 73582-75075 , 049_O03.ab1: 73587-75022 , 050_B10.ab1: 73581-75101 , 050_I19.ab1: 73582-74958 , 051_B14.ab1: 73581-75134 , 051_N02.ab1: 73597-75106 , 052_C08.ab1: 73582-75098 , 052_O15.ab1: 73582-75127 , 052_O17.ab1: 73582-75056 , 052_P08.ab1: 73581-75105 , 053_A01.ab1: 73582-74859

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001741_080 0.0 rubber biosynthesis Gene Name: REF8 small rubber particle protein [Hevea brasiliensis]
2 Hb_060668_010 0.0660077108 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
3 Hb_005016_130 0.0742164794 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
4 Hb_000041_070 0.0747446008 - - hypothetical protein POPTR_0001s34870g [Populus trichocarpa]
5 Hb_000078_030 0.0847777485 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000444_030 0.0868264023 - - PREDICTED: expansin-A20 [Jatropha curcas]
7 Hb_012799_060 0.0881320533 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
8 Hb_001514_180 0.0901689118 transcription factor TF Family: M-type hypothetical protein JCGZ_16067 [Jatropha curcas]
9 Hb_000580_170 0.091616579 - - PREDICTED: arginase 1, mitochondrial [Jatropha curcas]
10 Hb_115919_020 0.0995329742 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
11 Hb_000284_010 0.1007261726 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_04974 [Jatropha curcas]
12 Hb_006816_440 0.1012493004 - - protein phosphatase 2c, putative [Ricinus communis]
13 Hb_000184_180 0.1020112836 - - putative C3HC4-type RING zinc finger protein [Hevea brasiliensis]
14 Hb_024505_040 0.1054333337 - - homogentisate geranylgeranyl transferase [Hevea brasiliensis]
15 Hb_003540_230 0.1059474469 - - PREDICTED: sphingosine kinase 1 isoform X1 [Jatropha curcas]
16 Hb_030765_020 0.1062944284 - - ABC transporter family protein [Hevea brasiliensis]
17 Hb_001102_010 0.1088186005 - - PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like isoform X2 [Glycine max]
18 Hb_002387_060 0.1122684 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004206_030 0.117330365 - - PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
20 Hb_000787_070 0.1183451659 - - Early nodulin 55-2 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001741_080 Hb_001741_080 Hb_060668_010 Hb_060668_010 Hb_001741_080--Hb_060668_010 Hb_005016_130 Hb_005016_130 Hb_001741_080--Hb_005016_130 Hb_000041_070 Hb_000041_070 Hb_001741_080--Hb_000041_070 Hb_000078_030 Hb_000078_030 Hb_001741_080--Hb_000078_030 Hb_000444_030 Hb_000444_030 Hb_001741_080--Hb_000444_030 Hb_012799_060 Hb_012799_060 Hb_001741_080--Hb_012799_060 Hb_004206_030 Hb_004206_030 Hb_060668_010--Hb_004206_030 Hb_060668_010--Hb_000041_070 Hb_060668_010--Hb_005016_130 Hb_001514_180 Hb_001514_180 Hb_060668_010--Hb_001514_180 Hb_030765_020 Hb_030765_020 Hb_060668_010--Hb_030765_020 Hb_115919_020 Hb_115919_020 Hb_005016_130--Hb_115919_020 Hb_000787_070 Hb_000787_070 Hb_005016_130--Hb_000787_070 Hb_005016_130--Hb_000078_030 Hb_010578_090 Hb_010578_090 Hb_005016_130--Hb_010578_090 Hb_000284_010 Hb_000284_010 Hb_005016_130--Hb_000284_010 Hb_000041_070--Hb_001514_180 Hb_000041_070--Hb_004206_030 Hb_002387_060 Hb_002387_060 Hb_000041_070--Hb_002387_060 Hb_002685_090 Hb_002685_090 Hb_000041_070--Hb_002685_090 Hb_000193_230 Hb_000193_230 Hb_000078_030--Hb_000193_230 Hb_000078_030--Hb_000284_010 Hb_000078_030--Hb_115919_020 Hb_001102_010 Hb_001102_010 Hb_000078_030--Hb_001102_010 Hb_002298_040 Hb_002298_040 Hb_000078_030--Hb_002298_040 Hb_000184_180 Hb_000184_180 Hb_000444_030--Hb_000184_180 Hb_000444_030--Hb_001514_180 Hb_006816_440 Hb_006816_440 Hb_000444_030--Hb_006816_440 Hb_000444_030--Hb_000041_070 Hb_043061_010 Hb_043061_010 Hb_000444_030--Hb_043061_010 Hb_000580_170 Hb_000580_170 Hb_012799_060--Hb_000580_170 Hb_012799_060--Hb_000078_030 Hb_012799_060--Hb_030765_020 Hb_012799_060--Hb_005016_130 Hb_003540_230 Hb_003540_230 Hb_012799_060--Hb_003540_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11615.6 210.001 49.9968 319.946 5120.01 9999.46
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18975.4 12788 12196.8 785.394 71.1944

CAGE analysis