Hb_000580_170

Information

Type -
Description -
Location Contig580: 109545-113537
Sequence    

Annotation

kegg
ID rcu:RCOM_1611220
description arginase, putative (EC:3.5.3.1)
nr
ID XP_012083598.1
description PREDICTED: arginase 1, mitochondrial [Jatropha curcas]
swissprot
ID Q7X7N2
description Arginase 1, mitochondrial OS=Oryza sativa subsp. japonica GN=ARG1 PE=2 SV=1
trembl
ID A0A067K179
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14544 PE=3 SV=1
Gene Ontology
ID GO:0005739
description arginase mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49851: 109688-113748 , PASA_asmbl_49852: 109688-113660 , PASA_asmbl_49853: 112682-113655
cDNA
(Sanger)
(ID:Location)		 005_A24.ab1: 111223-113678 , 030_P12.ab1: 111256-113673 , 034_J03.ab1: 111192-113678 , 034_K02.ab1: 111156-113673 , 040_P04.ab1: 111165-113673 , 047_P08.ab1: 112265-113748

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000580_170 0.0 - - PREDICTED: arginase 1, mitochondrial [Jatropha curcas]
2 Hb_012799_060 0.0535330852 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
3 Hb_000078_030 0.0843663725 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001741_080 0.091616579 rubber biosynthesis Gene Name: REF8 small rubber particle protein [Hevea brasiliensis]
5 Hb_003540_230 0.0928112364 - - PREDICTED: sphingosine kinase 1 isoform X1 [Jatropha curcas]
6 Hb_005016_130 0.094471904 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
7 Hb_001102_010 0.1022127632 - - PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like isoform X2 [Glycine max]
8 Hb_029584_140 0.1039934712 - - senescence-associated family protein [Populus trichocarpa]
9 Hb_030765_020 0.1066799022 - - ABC transporter family protein [Hevea brasiliensis]
10 Hb_000284_010 0.1078084028 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_04974 [Jatropha curcas]
11 Hb_003038_180 0.1078599218 - - PREDICTED: uncharacterized protein LOC105649131 [Jatropha curcas]
12 Hb_001722_040 0.1112008778 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
13 Hb_001109_120 0.1139090325 - - PREDICTED: acyl-CoA-binding protein-like [Nelumbo nucifera]
14 Hb_000062_580 0.1139505168 - - ATP binding protein, putative [Ricinus communis]
15 Hb_012305_060 0.1165193829 - - protein translocase, putative [Ricinus communis]
16 Hb_000787_070 0.1167737901 - - Early nodulin 55-2 precursor, putative [Ricinus communis]
17 Hb_010872_060 0.1185514208 transcription factor TF Family: MYB Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
18 Hb_000143_050 0.1187503007 - - PREDICTED: MFP1 attachment factor 1-like [Jatropha curcas]
19 Hb_002221_080 0.1196693567 - - PREDICTED: uncharacterized protein LOC105639992 [Jatropha curcas]
20 Hb_000184_180 0.1199439466 - - putative C3HC4-type RING zinc finger protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_000580_170 Hb_000580_170 Hb_012799_060 Hb_012799_060 Hb_000580_170--Hb_012799_060 Hb_000078_030 Hb_000078_030 Hb_000580_170--Hb_000078_030 Hb_001741_080 Hb_001741_080 Hb_000580_170--Hb_001741_080 Hb_003540_230 Hb_003540_230 Hb_000580_170--Hb_003540_230 Hb_005016_130 Hb_005016_130 Hb_000580_170--Hb_005016_130 Hb_001102_010 Hb_001102_010 Hb_000580_170--Hb_001102_010 Hb_012799_060--Hb_000078_030 Hb_012799_060--Hb_001741_080 Hb_030765_020 Hb_030765_020 Hb_012799_060--Hb_030765_020 Hb_012799_060--Hb_005016_130 Hb_012799_060--Hb_003540_230 Hb_000193_230 Hb_000193_230 Hb_000078_030--Hb_000193_230 Hb_000284_010 Hb_000284_010 Hb_000078_030--Hb_000284_010 Hb_000078_030--Hb_005016_130 Hb_115919_020 Hb_115919_020 Hb_000078_030--Hb_115919_020 Hb_000078_030--Hb_001102_010 Hb_002298_040 Hb_002298_040 Hb_000078_030--Hb_002298_040 Hb_060668_010 Hb_060668_010 Hb_001741_080--Hb_060668_010 Hb_001741_080--Hb_005016_130 Hb_000041_070 Hb_000041_070 Hb_001741_080--Hb_000041_070 Hb_001741_080--Hb_000078_030 Hb_000444_030 Hb_000444_030 Hb_001741_080--Hb_000444_030 Hb_002235_230 Hb_002235_230 Hb_003540_230--Hb_002235_230 Hb_029584_140 Hb_029584_140 Hb_003540_230--Hb_029584_140 Hb_003540_230--Hb_005016_130 Hb_003038_180 Hb_003038_180 Hb_003540_230--Hb_003038_180 Hb_005016_130--Hb_115919_020 Hb_000787_070 Hb_000787_070 Hb_005016_130--Hb_000787_070 Hb_010578_090 Hb_010578_090 Hb_005016_130--Hb_010578_090 Hb_005016_130--Hb_000284_010 Hb_011457_100 Hb_011457_100 Hb_001102_010--Hb_011457_100 Hb_002835_170 Hb_002835_170 Hb_001102_010--Hb_002835_170 Hb_001102_010--Hb_000787_070 Hb_001102_010--Hb_005016_130 Hb_001102_010--Hb_000193_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
558.921 17.5876 17.7997 29.2789 232.531 317.472
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
766.571 528.264 415.349 16.8052 18.336

CAGE analysis