Hb_000836_500

Information

Type -
Description -
Location Contig836: 424750-426234
Sequence    

Annotation

kegg
ID rcu:RCOM_1616730
description Late embryogenesis abundant protein Lea14-A, putative
nr
ID XP_002511927.1
description Late embryogenesis abundant protein Lea14-A, putative [Ricinus communis]
swissprot
ID P46518
description Late embryogenesis abundant protein Lea14-A OS=Gossypium hirsutum GN=LEA14-A PE=2 SV=1
trembl
ID B9RDY8
description Late embryogenesis abundant protein Lea14-A, putative OS=Ricinus communis GN=RCOM_1616730 PE=4 SV=1
Gene Ontology
ID GO:0005829
description desiccation protectant protein lea14 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59984: 424840-426201
cDNA
(Sanger)
(ID:Location)		 003_P12.ab1: 425042-426142 , 031_L15.ab1: 425042-426142 , 037_G03.ab1: 425042-426110 , 052_I07.ab1: 425042-426142

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000836_500 0.0 - - Late embryogenesis abundant protein Lea14-A, putative [Ricinus communis]
2 Hb_000178_110 0.0940180965 - - conserved hypothetical protein [Ricinus communis]
3 Hb_012725_110 0.108128051 - - hypothetical protein JCGZ_09397 [Jatropha curcas]
4 Hb_002291_030 0.1154669469 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]
5 Hb_002928_110 0.1244278126 - - PREDICTED: uncharacterized protein LOC105635235 [Jatropha curcas]
6 Hb_029584_140 0.126199623 - - senescence-associated family protein [Populus trichocarpa]
7 Hb_002936_050 0.1280686163 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR18 isoform X2 [Jatropha curcas]
8 Hb_012522_030 0.1303671979 - - ankyrin repeat-containing protein, putative [Ricinus communis]
9 Hb_003581_090 0.1341636913 - - PREDICTED: galactose oxidase [Jatropha curcas]
10 Hb_004206_030 0.1378254253 - - PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
11 Hb_007120_070 0.138824411 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
12 Hb_002685_090 0.1391986866 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0004s04590g [Populus trichocarpa]
13 Hb_012799_060 0.1408844218 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
14 Hb_000580_170 0.1422854031 - - PREDICTED: arginase 1, mitochondrial [Jatropha curcas]
15 Hb_003020_310 0.143590688 - - glycosyltransferase, putative [Ricinus communis]
16 Hb_002387_060 0.1445817034 - - conserved hypothetical protein [Ricinus communis]
17 Hb_012366_020 0.1457780265 - - unnamed protein product [Vitis vinifera]
18 Hb_002260_090 0.1486963119 - - PREDICTED: uncharacterized protein LOC105636025 isoform X1 [Jatropha curcas]
19 Hb_005615_070 0.1498542825 - - Rab7 [Hevea brasiliensis]
20 Hb_030765_020 0.1500635242 - - ABC transporter family protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_000836_500 Hb_000836_500 Hb_000178_110 Hb_000178_110 Hb_000836_500--Hb_000178_110 Hb_012725_110 Hb_012725_110 Hb_000836_500--Hb_012725_110 Hb_002291_030 Hb_002291_030 Hb_000836_500--Hb_002291_030 Hb_002928_110 Hb_002928_110 Hb_000836_500--Hb_002928_110 Hb_029584_140 Hb_029584_140 Hb_000836_500--Hb_029584_140 Hb_002936_050 Hb_002936_050 Hb_000836_500--Hb_002936_050 Hb_000178_110--Hb_029584_140 Hb_007120_070 Hb_007120_070 Hb_000178_110--Hb_007120_070 Hb_000178_110--Hb_012725_110 Hb_012799_060 Hb_012799_060 Hb_000178_110--Hb_012799_060 Hb_000580_170 Hb_000580_170 Hb_000178_110--Hb_000580_170 Hb_004206_030 Hb_004206_030 Hb_012725_110--Hb_004206_030 Hb_002387_060 Hb_002387_060 Hb_012725_110--Hb_002387_060 Hb_002685_090 Hb_002685_090 Hb_012725_110--Hb_002685_090 Hb_000041_070 Hb_000041_070 Hb_012725_110--Hb_000041_070 Hb_012725_110--Hb_002291_030 Hb_002291_030--Hb_002928_110 Hb_012522_030 Hb_012522_030 Hb_002291_030--Hb_012522_030 Hb_002326_030 Hb_002326_030 Hb_002291_030--Hb_002326_030 Hb_001478_050 Hb_001478_050 Hb_002291_030--Hb_001478_050 Hb_002291_030--Hb_002387_060 Hb_092706_020 Hb_092706_020 Hb_002291_030--Hb_092706_020 Hb_002928_110--Hb_001478_050 Hb_002928_110--Hb_092706_020 Hb_002928_110--Hb_002326_030 Hb_002928_110--Hb_012522_030 Hb_002928_110--Hb_012725_110 Hb_003540_230 Hb_003540_230 Hb_029584_140--Hb_003540_230 Hb_003038_180 Hb_003038_180 Hb_029584_140--Hb_003038_180 Hb_029584_140--Hb_012799_060 Hb_029584_140--Hb_000580_170 Hb_029584_140--Hb_007120_070 Hb_030765_020 Hb_030765_020 Hb_029584_140--Hb_030765_020 Hb_042729_010 Hb_042729_010 Hb_002936_050--Hb_042729_010 Hb_000419_040 Hb_000419_040 Hb_002936_050--Hb_000419_040 Hb_000003_840 Hb_000003_840 Hb_002936_050--Hb_000003_840 Hb_002936_050--Hb_012522_030 Hb_001278_050 Hb_001278_050 Hb_002936_050--Hb_001278_050 Hb_002897_060 Hb_002897_060 Hb_002936_050--Hb_002897_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
654.5 40.6842 76.6947 18.5138 255.74 212.764
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
987.901 723.618 887.235 42.3586 6.98532

CAGE analysis