Hb_001012_040

Information

Type -
Description -
Location Contig1012: 56016-61532
Sequence    

Annotation

kegg
ID rcu:RCOM_0482400
description mads box protein, putative (EC:1.3.1.74)
nr
ID XP_012068068.1
description PREDICTED: MADS-box transcription factor 23-like isoform X2 [Jatropha curcas]
swissprot
ID A2RVQ5
description Agamous-like MADS-box protein AGL16 OS=Arabidopsis thaliana GN=AGL16 PE=1 SV=1
trembl
ID B9SMY1
description Mads box protein, putative OS=Ricinus communis GN=RCOM_0482400 PE=4 SV=1
Gene Ontology
ID GO:0005634
description mads-box transcription factor 23-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001012_040 0.0 - - PREDICTED: MADS-box transcription factor 23-like isoform X2 [Jatropha curcas]
2 Hb_001723_080 0.1183187746 - - hypothetical protein L484_026139 [Morus notabilis]
3 Hb_000454_110 0.1306350196 - - PREDICTED: polyprenol reductase 2-like isoform X3 [Populus euphratica]
4 Hb_012395_210 0.1357939994 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004206_030 0.1366521005 - - PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
6 Hb_005539_210 0.1371047574 - - -
7 Hb_001213_120 0.1379662032 - - PREDICTED: immediate early response 3-interacting protein 1-like [Brassica rapa]
8 Hb_000078_010 0.1453153833 - - hypothetical protein POPTR_0006s06510g, partial [Populus trichocarpa]
9 Hb_000300_400 0.1460988551 - - hypothetical protein PHAVU_001G114100g [Phaseolus vulgaris]
10 Hb_014497_110 0.1468746195 - - PREDICTED: AT-hook motif nuclear-localized protein 25-like [Jatropha curcas]
11 Hb_010594_030 0.1507679396 - - -
12 Hb_002260_090 0.1526091513 - - PREDICTED: uncharacterized protein LOC105636025 isoform X1 [Jatropha curcas]
13 Hb_042729_010 0.1526912402 - - -
14 Hb_001153_200 0.1533773687 - - PREDICTED: calcium-dependent protein kinase 26 isoform X1 [Jatropha curcas]
15 Hb_003106_140 0.1612712229 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001278_050 0.1620454827 - - PREDICTED: uncharacterized protein LOC105636924 [Jatropha curcas]
17 Hb_001473_120 0.1663568548 - - Uncharacterized protein isoform 1 [Theobroma cacao]
18 Hb_005214_130 0.1669559885 - - -
19 Hb_012395_200 0.1710721733 - - conserved hypothetical protein [Ricinus communis]
20 Hb_149683_010 0.171918781 rubber biosynthesis Gene Name: REF2 RecName: Full=Rubber elongation factor protein; Short=REF; AltName: Allergen=Hev b 1 [Hevea brasiliensis]

Gene co-expression network

sample Hb_001012_040 Hb_001012_040 Hb_001723_080 Hb_001723_080 Hb_001012_040--Hb_001723_080 Hb_000454_110 Hb_000454_110 Hb_001012_040--Hb_000454_110 Hb_012395_210 Hb_012395_210 Hb_001012_040--Hb_012395_210 Hb_004206_030 Hb_004206_030 Hb_001012_040--Hb_004206_030 Hb_005539_210 Hb_005539_210 Hb_001012_040--Hb_005539_210 Hb_001213_120 Hb_001213_120 Hb_001012_040--Hb_001213_120 Hb_001723_080--Hb_000454_110 Hb_000300_400 Hb_000300_400 Hb_001723_080--Hb_000300_400 Hb_008705_090 Hb_008705_090 Hb_001723_080--Hb_008705_090 Hb_012395_200 Hb_012395_200 Hb_001723_080--Hb_012395_200 Hb_001723_080--Hb_012395_210 Hb_103752_010 Hb_103752_010 Hb_000454_110--Hb_103752_010 Hb_149683_010 Hb_149683_010 Hb_000454_110--Hb_149683_010 Hb_000039_170 Hb_000039_170 Hb_000454_110--Hb_000039_170 Hb_000454_110--Hb_012395_200 Hb_004297_040 Hb_004297_040 Hb_012395_210--Hb_004297_040 Hb_000078_010 Hb_000078_010 Hb_012395_210--Hb_000078_010 Hb_012395_210--Hb_001213_120 Hb_000367_280 Hb_000367_280 Hb_012395_210--Hb_000367_280 Hb_001102_250 Hb_001102_250 Hb_012395_210--Hb_001102_250 Hb_012395_210--Hb_005539_210 Hb_060668_010 Hb_060668_010 Hb_004206_030--Hb_060668_010 Hb_012725_110 Hb_012725_110 Hb_004206_030--Hb_012725_110 Hb_000041_070 Hb_000041_070 Hb_004206_030--Hb_000041_070 Hb_042729_010 Hb_042729_010 Hb_004206_030--Hb_042729_010 Hb_003106_140 Hb_003106_140 Hb_004206_030--Hb_003106_140 Hb_002387_060 Hb_002387_060 Hb_004206_030--Hb_002387_060 Hb_005539_210--Hb_000300_400 Hb_002492_020 Hb_002492_020 Hb_005539_210--Hb_002492_020 Hb_010594_030 Hb_010594_030 Hb_005539_210--Hb_010594_030 Hb_005539_210--Hb_001723_080 Hb_001213_120--Hb_000367_280 Hb_001268_080 Hb_001268_080 Hb_001213_120--Hb_001268_080 Hb_078633_010 Hb_078633_010 Hb_001213_120--Hb_078633_010 Hb_001213_120--Hb_004297_040 Hb_015934_020 Hb_015934_020 Hb_001213_120--Hb_015934_020 Hb_007810_030 Hb_007810_030 Hb_001213_120--Hb_007810_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.508643 0.181885 0 0 0.263922 0.699641
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.11761 1.88157 1.53229 0.295735 0

CAGE analysis