Hb_002492_020

Information

Type -
Description -
Location Contig2492: 133061-135408
Sequence    

Annotation

kegg
ID -
description -
nr
ID XP_010513588.1
description PREDICTED: uncharacterized protein LOC104789613 [Camelina sativa]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 021_G09r.ab1: 135159-135609

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002492_020 0.0 - - PREDICTED: uncharacterized protein LOC104789613 [Camelina sativa]
2 Hb_010166_020 0.1124877142 transcription factor TF Family: NF-YC ccaat-binding transcription factor, putative [Ricinus communis]
3 Hb_010594_030 0.1283337382 - - -
4 Hb_004055_060 0.1307729178 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
5 Hb_005539_210 0.1388486401 - - -
6 Hb_001198_030 0.1389572321 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
7 Hb_007741_040 0.1401272586 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105643153 [Jatropha curcas]
8 Hb_011689_050 0.1436450308 - - hypothetical protein POPTR_0008s20290g [Populus trichocarpa]
9 Hb_005211_070 0.1448478077 - - PREDICTED: uncharacterized protein LOC105642009 [Jatropha curcas]
10 Hb_001349_010 0.149516033 - - -
11 Hb_001153_080 0.1558563382 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL19 [Jatropha curcas]
12 Hb_006745_060 0.1583417209 - - -
13 Hb_005615_070 0.1622173768 - - Rab7 [Hevea brasiliensis]
14 Hb_004297_040 0.1645689968 - - acyl CoA reductase [Hevea brasiliensis]
15 Hb_000300_400 0.1672785175 - - hypothetical protein PHAVU_001G114100g [Phaseolus vulgaris]
16 Hb_010362_020 0.1673208488 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 38-like [Jatropha curcas]
17 Hb_000161_050 0.1689178463 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000526_020 0.171509148 - - thioredoxin-like family protein [Hevea brasiliensis]
19 Hb_000544_110 0.17222532 - - PREDICTED: probable calcium-binding protein CML27 [Jatropha curcas]
20 Hb_002007_050 0.1723048 - - PREDICTED: putative protease Do-like 14 [Jatropha curcas]

Gene co-expression network

sample Hb_002492_020 Hb_002492_020 Hb_010166_020 Hb_010166_020 Hb_002492_020--Hb_010166_020 Hb_010594_030 Hb_010594_030 Hb_002492_020--Hb_010594_030 Hb_004055_060 Hb_004055_060 Hb_002492_020--Hb_004055_060 Hb_005539_210 Hb_005539_210 Hb_002492_020--Hb_005539_210 Hb_001198_030 Hb_001198_030 Hb_002492_020--Hb_001198_030 Hb_007741_040 Hb_007741_040 Hb_002492_020--Hb_007741_040 Hb_001266_050 Hb_001266_050 Hb_010166_020--Hb_001266_050 Hb_010166_020--Hb_001198_030 Hb_000052_010 Hb_000052_010 Hb_010166_020--Hb_000052_010 Hb_000526_020 Hb_000526_020 Hb_010166_020--Hb_000526_020 Hb_010166_020--Hb_007741_040 Hb_034585_050 Hb_034585_050 Hb_010594_030--Hb_034585_050 Hb_001102_250 Hb_001102_250 Hb_010594_030--Hb_001102_250 Hb_005211_070 Hb_005211_070 Hb_010594_030--Hb_005211_070 Hb_012395_210 Hb_012395_210 Hb_010594_030--Hb_012395_210 Hb_006351_110 Hb_006351_110 Hb_010594_030--Hb_006351_110 Hb_003023_050 Hb_003023_050 Hb_004055_060--Hb_003023_050 Hb_001279_250 Hb_001279_250 Hb_004055_060--Hb_001279_250 Hb_004055_060--Hb_000052_010 Hb_000580_160 Hb_000580_160 Hb_004055_060--Hb_000580_160 Hb_004055_060--Hb_010166_020 Hb_000300_400 Hb_000300_400 Hb_005539_210--Hb_000300_400 Hb_005539_210--Hb_012395_210 Hb_001012_040 Hb_001012_040 Hb_005539_210--Hb_001012_040 Hb_005539_210--Hb_010594_030 Hb_001723_080 Hb_001723_080 Hb_005539_210--Hb_001723_080 Hb_001349_010 Hb_001349_010 Hb_001198_030--Hb_001349_010 Hb_004297_040 Hb_004297_040 Hb_001198_030--Hb_004297_040 Hb_001198_030--Hb_001266_050 Hb_000143_050 Hb_000143_050 Hb_001198_030--Hb_000143_050 Hb_001621_180 Hb_001621_180 Hb_001198_030--Hb_001621_180 Hb_003777_230 Hb_003777_230 Hb_007741_040--Hb_003777_230 Hb_007741_040--Hb_004055_060 Hb_003050_070 Hb_003050_070 Hb_007741_040--Hb_003050_070 Hb_002835_220 Hb_002835_220 Hb_007741_040--Hb_002835_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.2061 0.701099 0.794731 0.12434 9.64669 4.47797
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.1645 35.8814 12.2245 5.34297 0.47563

CAGE analysis