Hb_003777_230

Information

Type -
Description -
Location Contig3777: 300375-310779
Sequence    

Annotation

kegg
ID cit:102618780
description abscisic stress-ripening protein 1-like
nr
ID XP_006473073.1
description PREDICTED: abscisic stress-ripening protein 1-like [Citrus sinensis]
swissprot
ID P37219
description Abscisic stress-ripening protein 2 OS=Solanum lycopersicum GN=ASR2 PE=4 SV=1
trembl
ID Q2TUW1
description Abscisic stress ripening-like protein OS=Glycine max PE=2 SV=1
Gene Ontology
ID GO:0006950
description abscisic stress-ripening protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38456: 300463-301307 , PASA_asmbl_38457: 300564-301197 , PASA_asmbl_38458: 310210-310526
cDNA
(Sanger)
(ID:Location)		 001_D20.ab1: 300533-301153 , 001_L24.ab1: 300612-301202 , 002_B12.ab1: 300533-300974 , 002_C13.ab1: 300618-301196 , 002_N09.ab1: 300533-301184 , 002_P22.ab1: 300533-300974 , 003_A07.ab1: 300532-300974 , 003_C07.ab1: 300526-301196 , 003_F11.ab1: 300618-301196 , 003_H16.ab1: 300532-301196 , 003_L01.ab1: 300533-301196 , 003_O03.ab1: 300533-301196 , 003_P15.ab1: 300533-301196 , 004_A18.ab1: 300532-301196 , 004_B24.ab1: 300535-301189 , 004_C15.ab1: 300533-301189 , 004_H07.ab1: 300533-301208 , 004_I23.ab1: 300608-301196 , 005_C05.ab1: 300533-301196 , 005_C12.ab1: 300533-301208 , 005_E06.ab1: 300533-301194 , 005_G18.ab1: 300535-300974 , 005_H06.ab1: 300532-301196 , 005_J13.ab1: 300619-301196 , 005_K15.ab1: 300535-301190 , 005_K19.ab1: 300464-301196 , 006_K24.ab1: 300530-301208 , 006_M23.ab1: 300533-301196 , 007_D21.ab1: 300532-301208 , 007_F15.ab1: 300533-301196 , 007_L22.ab1: 300532-301173 , 007_N05.ab1: 300533-301208 , 007_P15.ab1: 300608-301196 , 008_I05.ab1: 300618-301189 , 010_B14.ab1: 300528-301208 , 011_B05.ab1: 300535-301196 , 011_C09.ab1: 300532-301194 , 011_J03.ab1: 300533-301194 , 011_M24.ab1: 300533-301205 , 011_P02.ab1: 300533-301188 , 012_M03.ab1: 300535-301196 , 013_A03.ab1: 300533-301210 , 013_J09.ab1: 300533-301196 , 014_G11.ab1: 300533-301196 , 014_M11.ab1: 300532-301208 , 014_O16.ab1: 300530-301228 , 015_P04.ab1: 300534-301197 , 015_P18.ab1: 300532-301196 , 016_I22.ab1: 300533-301194 , 017_D17.ab1: 300519-301194 , 017_I02.ab1: 300612-301208 , 017_M07.ab1: 300532-301196 , 017_N19.ab1: 300619-301184 , 018_A12.ab1: 300533-301233 , 018_D13.ab1: 300533-301195 , 018_G21.ab1: 300532-301188 , 018_H23.ab1: 300535-301189 , 019_A04.ab1: 300532-301196 , 019_I01.ab1: 300534-301197 , 019_L04.ab1: 300533-301196 , 020_J13.ab1: 300532-301190 , 020_M20.ab1: 300532-301229 , 021_B16.ab1: 300533-301196 , 021_B17.ab1: 300532-301208 , 021_H01.ab1: 300533-301196 , 021_O10.ab1: 300533-301189 , 022_J01.ab1: 300533-301190 , 022_J04.ab1: 300532-301196 , 022_O03.ab1: 300537-301028 , 023_B20.ab1: 300612-301202 , 023_H15.ab1: 300612-301202 , 023_I11.ab1: 300614-301032 , 023_N15.ab1: 300535-301201 , 024_H21.ab1: 300994-301196 , 024_I21.ab1: 300519-301196 , 024_K07.ab1: 300509-300960 , 024_M23.ab1: 300519-301197 , 025_A02.ab1: 300532-301188 , 025_A16.ab1: 300608-301190 , 025_B09.ab1: 300530-301227 , 025_F20.ab1: 300525-301203 , 025_G23.ab1: 300532-301190 , 025_P20.ab1: 300530-301195 , 026_L10.ab1: 300533-301184 , 026_M02.ab1: 300533-301194 , 026_N04.ab1: 300532-301201 , 027_F07.ab1: 300618-301189 , 027_M01.ab1: 300533-301188 , 028_B19.ab1: 300533-301196 , 028_G06.ab1: 300533-301196 , 028_H10.ab1: 300535-301196 , 028_L16.ab1: 300533-301201 , 029_A11.ab1: 300532-301183 , 029_B23.ab1: 300533-301196 , 029_O04.ab1: 300533-301196 , 030_D15.ab1: 300533-301196 , 030_F22.ab1: 300535-301196 , 030_H12.ab1: 300593-301232 , 030_J17.ab1: 300533-301196 , 030_J22.ab1: 300535-300974 , 030_P16.ab1: 300533-301208 , 031_H11.ab1: 300619-301196 , 032_J21.ab1: 300864-301188 , 032_K10.ab1: 300533-301196 , 033_A22.ab1: 300532-301208 , 033_B09.ab1: 300533-301189 , 033_B14.ab1: 300533-301194 , 033_F19.ab1: 300532-301194 , 033_L11.ab1: 300533-301196 , 033_N07.ab1: 300533-300974 , 034_H18.ab1: 300533-301206 , 034_N14.ab1: 300533-301188 , 034_P21.ab1: 300534-301196 , 035_B15.ab1: 300533-301196 , 035_C10.ab1: 300533-301194 , 035_H09.ab1: 300608-301196 , 035_N16.ab1: 300532-301206 , 035_N18.ab1: 300532-301196 , 036_A08.ab1: 300463-301196 , 036_E06.ab1: 300533-301201 , 036_G03.ab1: 300539-301190 , 037_C09.ab1: 300900-301196 , 037_J09.ab1: 300532-300974 , 037_M14.ab1: 300532-301196 , 037_P24.ab1: 300533-301190 , 038_F02.ab1: 300532-301189 , 038_I10.ab1: 300532-301206 , 038_K15.ab1: 300612-301208 , 038_N20.ab1: 300532-300974 , 039_E05.ab1: 300535-301196 , 039_E07.ab1: 300533-301194 , 039_E12.ab1: 300535-301196 , 039_L01.ab1: 300533-301153 , 039_M18.ab1: 300532-301188 , 039_P09.ab1: 300533-301190 , 040_D06.ab1: 300533-301196 , 040_G20.ab1: 300535-301190 , 040_J20.ab1: 300533-301196 , 040_L19.ab1: 300533-301194 , 040_P10.ab1: 300532-301207 , 041_A17.ab1: 300533-301196 , 041_D15.ab1: 300530-301194 , 041_H24.ab1: 300532-301184 , 041_J23.ab1: 300530-301175 , 042_B05.ab1: 300533-301196 , 042_B15.ab1: 300618-301196 , 042_F22.ab1: 300533-301188 , 042_G08.ab1: 300533-301208 , 042_L17.ab1: 300608-301194 , 042_L18.ab1: 300532-301294 , 043_A10.ab1: 300532-301214 , 043_A22.ab1: 300530-301232 , 043_A23.ab1: 300608-301190 , 043_F14.ab1: 300533-301208 , 043_P05.ab1: 300533-301194 , 044_B10.ab1: 300533-301208 , 044_G08.ab1: 300532-301196 , 044_I02.ab1: 300533-301154 , 044_N03.ab1: 300535-301196 , 045_D06.ab1: 300608-301190 , 046_K15.ab1: 300532-301194 , 046_L13.ab1: 300533-301196 , 047_A08.ab1: 300532-300974 , 047_E15.ab1: 300608-301196 , 047_H15.ab1: 300533-301196 , 047_O10.ab1: 300533-300974 , 048_D11.ab1: 300535-301206 , 048_H03.ab1: 300533-301189 , 049_B04.ab1: 300539-301179 , 049_H11.ab1: 300533-300974 , 049_M17.ab1: 300608-301190 , 049_N06.ab1: 300608-301194 , 049_O02.ab1: 300532-301208 , 049_O05.ab1: 300534-301197 , 050_A19.ab1: 300619-301194 , 050_G12.ab1: 300608-301196 , 050_I15.ab1: 300533-301189 , 050_N21.ab1: 300534-300974 , 051_A20.ab1: 300533-301196 , 051_B03.ab1: 300532-301196 , 051_E03.ab1: 300535-301196 , 051_O01.ab1: 300619-301194 , 052_E02.ab1: 300533-301196 , 052_F03.ab1: 300532-301214 , 052_N14.ab1: 300532-301196 , 052_O07.ab1: 300535-301196 , 052_P23.ab1: 300532-300974 , 053_L09.ab1: 300533-301205

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003777_230 0.0 - - PREDICTED: abscisic stress-ripening protein 1-like [Citrus sinensis]
2 Hb_000052_010 0.1050888824 - - hypothetical protein M569_08416, partial [Genlisea aurea]
3 Hb_000603_210 0.1179894677 - - hypothetical protein POPTR_0006s23660g [Populus trichocarpa]
4 Hb_010166_020 0.1248339797 transcription factor TF Family: NF-YC ccaat-binding transcription factor, putative [Ricinus communis]
5 Hb_007741_040 0.1283434897 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105643153 [Jatropha curcas]
6 Hb_001007_050 0.1318337476 - - hypothetical protein MIMGU_mgv1a0196712mg, partial [Erythranthe guttata]
7 Hb_004055_060 0.1340070622 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
8 Hb_000300_400 0.1348052561 - - hypothetical protein PHAVU_001G114100g [Phaseolus vulgaris]
9 Hb_002260_020 0.1390895478 - - -
10 Hb_001279_250 0.1391659402 - - PREDICTED: pectate lyase-like [Jatropha curcas]
11 Hb_008705_090 0.1394695636 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-2-like [Jatropha curcas]
12 Hb_000714_010 0.1465089175 - - PREDICTED: salt stress-induced hydrophobic peptide ESI3 [Vitis vinifera]
13 Hb_003050_070 0.1469784442 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001266_050 0.1471425435 - - PREDICTED: lipid phosphate phosphatase epsilon 2, chloroplastic-like isoform X2 [Elaeis guineensis]
15 Hb_149683_010 0.1486323016 rubber biosynthesis Gene Name: REF2 RecName: Full=Rubber elongation factor protein; Short=REF; AltName: Allergen=Hev b 1 [Hevea brasiliensis]
16 Hb_001723_080 0.1509014903 - - hypothetical protein L484_026139 [Morus notabilis]
17 Hb_006816_440 0.1563945814 - - protein phosphatase 2c, putative [Ricinus communis]
18 Hb_000184_180 0.1594109643 - - putative C3HC4-type RING zinc finger protein [Hevea brasiliensis]
19 Hb_000526_020 0.1642893051 - - thioredoxin-like family protein [Hevea brasiliensis]
20 Hb_103752_010 0.1653177303 - - PREDICTED: uncharacterized protein At5g39865-like [Jatropha curcas]

Gene co-expression network

sample Hb_003777_230 Hb_003777_230 Hb_000052_010 Hb_000052_010 Hb_003777_230--Hb_000052_010 Hb_000603_210 Hb_000603_210 Hb_003777_230--Hb_000603_210 Hb_010166_020 Hb_010166_020 Hb_003777_230--Hb_010166_020 Hb_007741_040 Hb_007741_040 Hb_003777_230--Hb_007741_040 Hb_001007_050 Hb_001007_050 Hb_003777_230--Hb_001007_050 Hb_004055_060 Hb_004055_060 Hb_003777_230--Hb_004055_060 Hb_000184_180 Hb_000184_180 Hb_000052_010--Hb_000184_180 Hb_000526_020 Hb_000526_020 Hb_000052_010--Hb_000526_020 Hb_006816_440 Hb_006816_440 Hb_000052_010--Hb_006816_440 Hb_149683_010 Hb_149683_010 Hb_000052_010--Hb_149683_010 Hb_000052_010--Hb_004055_060 Hb_000300_400 Hb_000300_400 Hb_000603_210--Hb_000300_400 Hb_002235_230 Hb_002235_230 Hb_000603_210--Hb_002235_230 Hb_000603_210--Hb_006816_440 Hb_000444_030 Hb_000444_030 Hb_000603_210--Hb_000444_030 Hb_000603_210--Hb_149683_010 Hb_001266_050 Hb_001266_050 Hb_010166_020--Hb_001266_050 Hb_002492_020 Hb_002492_020 Hb_010166_020--Hb_002492_020 Hb_001198_030 Hb_001198_030 Hb_010166_020--Hb_001198_030 Hb_010166_020--Hb_000052_010 Hb_010166_020--Hb_000526_020 Hb_010166_020--Hb_007741_040 Hb_007741_040--Hb_002492_020 Hb_007741_040--Hb_004055_060 Hb_003050_070 Hb_003050_070 Hb_007741_040--Hb_003050_070 Hb_002835_220 Hb_002835_220 Hb_007741_040--Hb_002835_220 Hb_010172_100 Hb_010172_100 Hb_001007_050--Hb_010172_100 Hb_008705_090 Hb_008705_090 Hb_001007_050--Hb_008705_090 Hb_004474_010 Hb_004474_010 Hb_001007_050--Hb_004474_010 Hb_001101_010 Hb_001101_010 Hb_001007_050--Hb_001101_010 Hb_002260_020 Hb_002260_020 Hb_001007_050--Hb_002260_020 Hb_003023_050 Hb_003023_050 Hb_004055_060--Hb_003023_050 Hb_001279_250 Hb_001279_250 Hb_004055_060--Hb_001279_250 Hb_000580_160 Hb_000580_160 Hb_004055_060--Hb_000580_160 Hb_004055_060--Hb_010166_020 Hb_004055_060--Hb_002492_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4316.57 94.2632 20.2562 228.126 3378.09 4983.11
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24023.8 19205.2 5146.32 719.364 48.6456

CAGE analysis