Hb_001007_050

Information

Type -
Description -
Location Contig1007: 26540-27429
Sequence    

Annotation

kegg
ID mdm:103442341
description tubulin alpha-2 chain
nr
ID EYU34085.1
description hypothetical protein MIMGU_mgv1a0196712mg, partial [Erythranthe guttata]
swissprot
ID Q6VAG0
description Tubulin alpha-2 chain OS=Gossypium hirsutum PE=2 SV=1
trembl
ID A0A022R5J4
description Uncharacterized protein (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a0196712mg PE=4 SV=1
Gene Ontology
ID GO:0005737
description tubulin alpha-2 chain

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00448: 26406-27583
cDNA
(Sanger)
(ID:Location)		 025_A12.ab1: 26828-27583

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001007_050 0.0 - - hypothetical protein MIMGU_mgv1a0196712mg, partial [Erythranthe guttata]
2 Hb_010172_100 0.1281565749 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Populus euphratica]
3 Hb_008705_090 0.1285237495 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-2-like [Jatropha curcas]
4 Hb_003777_230 0.1318337476 - - PREDICTED: abscisic stress-ripening protein 1-like [Citrus sinensis]
5 Hb_004474_010 0.1473917891 - - unnamed protein product [Coffea canephora]
6 Hb_001101_010 0.1670886574 - - hypothetical protein POPTR_0004s18730g [Populus trichocarpa]
7 Hb_002260_020 0.1673444527 - - -
8 Hb_000052_010 0.1825723967 - - hypothetical protein M569_08416, partial [Genlisea aurea]
9 Hb_001723_080 0.1840572739 - - hypothetical protein L484_026139 [Morus notabilis]
10 Hb_006351_110 0.1868755614 - - -
11 Hb_004635_060 0.1874752471 - - hypothetical protein POPTR_0006s22850g [Populus trichocarpa]
12 Hb_001587_060 0.1876316593 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001842_120 0.1905345287 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
14 Hb_008699_040 0.1912824732 - - -
15 Hb_001279_250 0.1920692638 - - PREDICTED: pectate lyase-like [Jatropha curcas]
16 Hb_178968_170 0.1950985407 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 homolog [Jatropha curcas]
17 Hb_004055_060 0.1956785201 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
18 Hb_103752_010 0.1964882012 - - PREDICTED: uncharacterized protein At5g39865-like [Jatropha curcas]
19 Hb_000714_010 0.1996391824 - - PREDICTED: salt stress-induced hydrophobic peptide ESI3 [Vitis vinifera]
20 Hb_004680_020 0.1996985853 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105789475 [Gossypium raimondii]

Gene co-expression network

sample Hb_001007_050 Hb_001007_050 Hb_010172_100 Hb_010172_100 Hb_001007_050--Hb_010172_100 Hb_008705_090 Hb_008705_090 Hb_001007_050--Hb_008705_090 Hb_003777_230 Hb_003777_230 Hb_001007_050--Hb_003777_230 Hb_004474_010 Hb_004474_010 Hb_001007_050--Hb_004474_010 Hb_001101_010 Hb_001101_010 Hb_001007_050--Hb_001101_010 Hb_002260_020 Hb_002260_020 Hb_001007_050--Hb_002260_020 Hb_005908_040 Hb_005908_040 Hb_010172_100--Hb_005908_040 Hb_006351_110 Hb_006351_110 Hb_010172_100--Hb_006351_110 Hb_005137_020 Hb_005137_020 Hb_010172_100--Hb_005137_020 Hb_000316_100 Hb_000316_100 Hb_010172_100--Hb_000316_100 Hb_001922_080 Hb_001922_080 Hb_010172_100--Hb_001922_080 Hb_008705_090--Hb_002260_020 Hb_001723_080 Hb_001723_080 Hb_008705_090--Hb_001723_080 Hb_008705_090--Hb_003777_230 Hb_008705_090--Hb_010172_100 Hb_000454_110 Hb_000454_110 Hb_008705_090--Hb_000454_110 Hb_000052_010 Hb_000052_010 Hb_003777_230--Hb_000052_010 Hb_000603_210 Hb_000603_210 Hb_003777_230--Hb_000603_210 Hb_010166_020 Hb_010166_020 Hb_003777_230--Hb_010166_020 Hb_007741_040 Hb_007741_040 Hb_003777_230--Hb_007741_040 Hb_004055_060 Hb_004055_060 Hb_003777_230--Hb_004055_060 Hb_003349_070 Hb_003349_070 Hb_004474_010--Hb_003349_070 Hb_004635_060 Hb_004635_060 Hb_004474_010--Hb_004635_060 Hb_004223_260 Hb_004223_260 Hb_004474_010--Hb_004223_260 Hb_008699_040 Hb_008699_040 Hb_004474_010--Hb_008699_040 Hb_004680_020 Hb_004680_020 Hb_004474_010--Hb_004680_020 Hb_004474_010--Hb_001723_080 Hb_002918_300 Hb_002918_300 Hb_001101_010--Hb_002918_300 Hb_000032_350 Hb_000032_350 Hb_001101_010--Hb_000032_350 Hb_001425_110 Hb_001425_110 Hb_001101_010--Hb_001425_110 Hb_032660_020 Hb_032660_020 Hb_001101_010--Hb_032660_020 Hb_001101_010--Hb_010172_100 Hb_080477_060 Hb_080477_060 Hb_002260_020--Hb_080477_060 Hb_008887_040 Hb_008887_040 Hb_002260_020--Hb_008887_040 Hb_168711_010 Hb_168711_010 Hb_002260_020--Hb_168711_010 Hb_002260_020--Hb_003349_070 Hb_030954_020 Hb_030954_020 Hb_002260_020--Hb_030954_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.30261 0.0473588 0 0.0982897 1.86833 5.52715
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.3929 24.0458 4.106 0.27751 0

CAGE analysis