Hb_000316_100

Information

Type -
Description -
Location Contig316: 58967-60433
Sequence    

Annotation

kegg
ID rcu:RCOM_1207100
description protein with unknown function
nr
ID XP_002530856.1
description protein with unknown function [Ricinus communis]
swissprot
ID P78813
description ENTH domain-containing protein C794.11c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC794.11c PE=1 SV=2
trembl
ID B9SXX7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1207100 PE=4 SV=1
Gene Ontology
ID GO:0006811
description clathrin interactor 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33309: 58988-60347
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000316_100 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_000175_130 0.1243018661 - - PREDICTED: PTI1-like tyrosine-protein kinase At3g15890 [Jatropha curcas]
3 Hb_010172_100 0.126608985 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Populus euphratica]
4 Hb_001842_080 0.1326632138 - - -
5 Hb_006351_110 0.1350253087 - - -
6 Hb_005908_040 0.1359348035 - - hypothetical protein POPTR_0017s06850g [Populus trichocarpa]
7 Hb_027892_040 0.1362315771 - - PREDICTED: proteasome subunit alpha type-6 [Jatropha curcas]
8 Hb_002045_230 0.1422740987 - - Ammonium transporter 2 [Theobroma cacao]
9 Hb_001922_080 0.1449570658 - - Tellurite resistance protein tehA, putative [Ricinus communis]
10 Hb_000340_440 0.1453595043 - - PREDICTED: gibberellin receptor GID1B [Jatropha curcas]
11 Hb_003095_070 0.1461267809 - - hypothetical protein POPTR_0009s11230g [Populus trichocarpa]
12 Hb_000270_730 0.1464848711 - - PREDICTED: ubiquitin-conjugating enzyme E2-23 kDa-like [Jatropha curcas]
13 Hb_058143_010 0.1557463181 - - hypothetical protein JCGZ_01992 [Jatropha curcas]
14 Hb_005137_020 0.1560794537 - - PREDICTED: uncharacterized protein LOC101759641 [Setaria italica]
15 Hb_001102_250 0.157781339 - - PREDICTED: E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X1 [Jatropha curcas]
16 Hb_000078_020 0.1578148389 - - -
17 Hb_039946_010 0.1647674001 - - hypothetical protein POPTR_0018s09200g [Populus trichocarpa]
18 Hb_000544_110 0.1679556354 - - PREDICTED: probable calcium-binding protein CML27 [Jatropha curcas]
19 Hb_002326_180 0.1682174285 - - Protein Z, putative [Ricinus communis]
20 Hb_183612_080 0.169847755 - - hypothetical protein POPTR_0001s00500g [Populus trichocarpa]

Gene co-expression network

sample Hb_000316_100 Hb_000316_100 Hb_000175_130 Hb_000175_130 Hb_000316_100--Hb_000175_130 Hb_010172_100 Hb_010172_100 Hb_000316_100--Hb_010172_100 Hb_001842_080 Hb_001842_080 Hb_000316_100--Hb_001842_080 Hb_006351_110 Hb_006351_110 Hb_000316_100--Hb_006351_110 Hb_005908_040 Hb_005908_040 Hb_000316_100--Hb_005908_040 Hb_027892_040 Hb_027892_040 Hb_000316_100--Hb_027892_040 Hb_000853_240 Hb_000853_240 Hb_000175_130--Hb_000853_240 Hb_002045_230 Hb_002045_230 Hb_000175_130--Hb_002045_230 Hb_002326_180 Hb_002326_180 Hb_000175_130--Hb_002326_180 Hb_001052_030 Hb_001052_030 Hb_000175_130--Hb_001052_030 Hb_000696_220 Hb_000696_220 Hb_000175_130--Hb_000696_220 Hb_010172_100--Hb_005908_040 Hb_010172_100--Hb_006351_110 Hb_005137_020 Hb_005137_020 Hb_010172_100--Hb_005137_020 Hb_001007_050 Hb_001007_050 Hb_010172_100--Hb_001007_050 Hb_001922_080 Hb_001922_080 Hb_010172_100--Hb_001922_080 Hb_000270_730 Hb_000270_730 Hb_001842_080--Hb_000270_730 Hb_001842_080--Hb_001922_080 Hb_032202_250 Hb_032202_250 Hb_001842_080--Hb_032202_250 Hb_183612_080 Hb_183612_080 Hb_001842_080--Hb_183612_080 Hb_001842_080--Hb_010172_100 Hb_004159_050 Hb_004159_050 Hb_006351_110--Hb_004159_050 Hb_001102_250 Hb_001102_250 Hb_006351_110--Hb_001102_250 Hb_000103_550 Hb_000103_550 Hb_006351_110--Hb_000103_550 Hb_010594_030 Hb_010594_030 Hb_006351_110--Hb_010594_030 Hb_005908_040--Hb_005137_020 Hb_005908_040--Hb_001102_250 Hb_004297_040 Hb_004297_040 Hb_005908_040--Hb_004297_040 Hb_003095_070 Hb_003095_070 Hb_005908_040--Hb_003095_070 Hb_000544_110 Hb_000544_110 Hb_005908_040--Hb_000544_110 Hb_000045_210 Hb_000045_210 Hb_027892_040--Hb_000045_210 Hb_012053_010 Hb_012053_010 Hb_027892_040--Hb_012053_010 Hb_001266_030 Hb_001266_030 Hb_027892_040--Hb_001266_030 Hb_044653_060 Hb_044653_060 Hb_027892_040--Hb_044653_060 Hb_000431_160 Hb_000431_160 Hb_027892_040--Hb_000431_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.4422 3.40671 1.33784 3.129 9.31805 20.3803
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
64.27 228.764 67.2729 4.73973 1.98516

CAGE analysis