Hb_183612_080

Information

Type -
Description -
Location Contig183612: 33123-33687
Sequence    

Annotation

kegg
ID pop:POPTR_0001s00500g
description hypothetical protein
nr
ID XP_006368206.1
description hypothetical protein POPTR_0001s00500g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9N3R9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s00500g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_183612_080 0.0 - - hypothetical protein POPTR_0001s00500g [Populus trichocarpa]
2 Hb_000617_110 0.119681007 - - translationally controlled tumor protein [Hevea brasiliensis]
3 Hb_000270_730 0.1307616732 - - PREDICTED: ubiquitin-conjugating enzyme E2-23 kDa-like [Jatropha curcas]
4 Hb_001842_120 0.1408904811 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
5 Hb_001842_080 0.1418701177 - - -
6 Hb_004159_050 0.1486941135 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000613_170 0.1504113775 - - PREDICTED: RPM1-interacting protein 4 [Jatropha curcas]
8 Hb_000431_160 0.1586087174 - - PREDICTED: protein transport protein Sec61 subunit gamma-like [Jatropha curcas]
9 Hb_027892_040 0.1594706822 - - PREDICTED: proteasome subunit alpha type-6 [Jatropha curcas]
10 Hb_000316_100 0.169847755 - - protein with unknown function [Ricinus communis]
11 Hb_000853_240 0.1710066271 - - -
12 Hb_006351_110 0.1716326512 - - -
13 Hb_001266_030 0.1718691637 - - PREDICTED: lipid phosphate phosphatase epsilon 2, chloroplastic-like [Jatropha curcas]
14 Hb_000819_070 0.1720579038 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 1 [Jatropha curcas]
15 Hb_005725_100 0.1736503083 - - hypothetical protein 30 [Hevea brasiliensis]
16 Hb_010172_100 0.1755727524 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Populus euphratica]
17 Hb_001587_060 0.1779349254 - - conserved hypothetical protein [Ricinus communis]
18 Hb_044653_060 0.1798145041 - - PREDICTED: uncharacterized protein LOC105628750 [Jatropha curcas]
19 Hb_032202_250 0.1814989901 - - PREDICTED: F-box protein PP2-A13 [Jatropha curcas]
20 Hb_030565_040 0.1815978948 - - glycine-rich RNA-binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_183612_080 Hb_183612_080 Hb_000617_110 Hb_000617_110 Hb_183612_080--Hb_000617_110 Hb_000270_730 Hb_000270_730 Hb_183612_080--Hb_000270_730 Hb_001842_120 Hb_001842_120 Hb_183612_080--Hb_001842_120 Hb_001842_080 Hb_001842_080 Hb_183612_080--Hb_001842_080 Hb_004159_050 Hb_004159_050 Hb_183612_080--Hb_004159_050 Hb_000613_170 Hb_000613_170 Hb_183612_080--Hb_000613_170 Hb_000431_160 Hb_000431_160 Hb_000617_110--Hb_000431_160 Hb_004545_130 Hb_004545_130 Hb_000617_110--Hb_004545_130 Hb_000819_070 Hb_000819_070 Hb_000617_110--Hb_000819_070 Hb_044653_060 Hb_044653_060 Hb_000617_110--Hb_044653_060 Hb_000879_210 Hb_000879_210 Hb_000617_110--Hb_000879_210 Hb_000635_080 Hb_000635_080 Hb_000617_110--Hb_000635_080 Hb_000270_730--Hb_001842_080 Hb_000398_030 Hb_000398_030 Hb_000270_730--Hb_000398_030 Hb_001922_080 Hb_001922_080 Hb_000270_730--Hb_001922_080 Hb_000316_100 Hb_000316_100 Hb_000270_730--Hb_000316_100 Hb_027892_040 Hb_027892_040 Hb_000270_730--Hb_027892_040 Hb_001504_320 Hb_001504_320 Hb_001842_120--Hb_001504_320 Hb_001425_110 Hb_001425_110 Hb_001842_120--Hb_001425_110 Hb_001842_120--Hb_001842_080 Hb_001842_120--Hb_000270_730 Hb_000046_200 Hb_000046_200 Hb_001842_120--Hb_000046_200 Hb_001842_080--Hb_001922_080 Hb_032202_250 Hb_032202_250 Hb_001842_080--Hb_032202_250 Hb_001842_080--Hb_000316_100 Hb_010172_100 Hb_010172_100 Hb_001842_080--Hb_010172_100 Hb_006351_110 Hb_006351_110 Hb_004159_050--Hb_006351_110 Hb_000270_620 Hb_000270_620 Hb_004159_050--Hb_000270_620 Hb_000103_550 Hb_000103_550 Hb_004159_050--Hb_000103_550 Hb_000920_320 Hb_000920_320 Hb_004159_050--Hb_000920_320 Hb_004159_050--Hb_000617_110 Hb_002248_100 Hb_002248_100 Hb_000613_170--Hb_002248_100 Hb_000613_170--Hb_000635_080 Hb_003549_020 Hb_003549_020 Hb_000613_170--Hb_003549_020 Hb_000613_170--Hb_000819_070 Hb_007943_140 Hb_007943_140 Hb_000613_170--Hb_007943_140 Hb_010827_020 Hb_010827_020 Hb_000613_170--Hb_010827_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.8318 3.76925 1.71493 9.24972 9.26922 22.2745
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
88.2664 244.475 29.5257 12.3646 1.22124

CAGE analysis