Hb_001842_080

Information

Type -
Description -
Location Contig1842: 135730-144425
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18049: 142986-143450
cDNA
(Sanger)
(ID:Location)		 038_D21.ab1: 142986-143430

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001842_080 0.0 - - -
2 Hb_000270_730 0.0965544854 - - PREDICTED: ubiquitin-conjugating enzyme E2-23 kDa-like [Jatropha curcas]
3 Hb_001922_080 0.1245951532 - - Tellurite resistance protein tehA, putative [Ricinus communis]
4 Hb_032202_250 0.1316895879 - - PREDICTED: F-box protein PP2-A13 [Jatropha curcas]
5 Hb_000316_100 0.1326632138 - - protein with unknown function [Ricinus communis]
6 Hb_183612_080 0.1418701177 - - hypothetical protein POPTR_0001s00500g [Populus trichocarpa]
7 Hb_010172_100 0.1484436482 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Populus euphratica]
8 Hb_027892_040 0.1519392032 - - PREDICTED: proteasome subunit alpha type-6 [Jatropha curcas]
9 Hb_001373_100 0.1551082041 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000398_030 0.1585123779 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000329_660 0.1619485885 - - PREDICTED: carotenoid cleavage dioxygenase 7, chloroplastic [Jatropha curcas]
12 Hb_006351_110 0.1639832804 - - -
13 Hb_000300_210 0.1643007932 - - gd2b, putative [Ricinus communis]
14 Hb_003226_240 0.1680514094 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
15 Hb_004968_070 0.1690528121 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004159_050 0.1697347257 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003376_210 0.1733211995 - - -
18 Hb_000617_110 0.1750652872 - - translationally controlled tumor protein [Hevea brasiliensis]
19 Hb_001186_070 0.1758555057 - - PREDICTED: F-box protein FBW2-like [Gossypium raimondii]
20 Hb_001425_110 0.176392751 - - hypothetical protein Csa_6G106200 [Cucumis sativus]

Gene co-expression network

sample Hb_001842_080 Hb_001842_080 Hb_000270_730 Hb_000270_730 Hb_001842_080--Hb_000270_730 Hb_001922_080 Hb_001922_080 Hb_001842_080--Hb_001922_080 Hb_032202_250 Hb_032202_250 Hb_001842_080--Hb_032202_250 Hb_000316_100 Hb_000316_100 Hb_001842_080--Hb_000316_100 Hb_183612_080 Hb_183612_080 Hb_001842_080--Hb_183612_080 Hb_010172_100 Hb_010172_100 Hb_001842_080--Hb_010172_100 Hb_000398_030 Hb_000398_030 Hb_000270_730--Hb_000398_030 Hb_000270_730--Hb_183612_080 Hb_000270_730--Hb_001922_080 Hb_000270_730--Hb_000316_100 Hb_027892_040 Hb_027892_040 Hb_000270_730--Hb_027892_040 Hb_001922_080--Hb_000398_030 Hb_001922_080--Hb_010172_100 Hb_001922_080--Hb_000316_100 Hb_000544_110 Hb_000544_110 Hb_001922_080--Hb_000544_110 Hb_003226_240 Hb_003226_240 Hb_032202_250--Hb_003226_240 Hb_000300_210 Hb_000300_210 Hb_032202_250--Hb_000300_210 Hb_001433_100 Hb_001433_100 Hb_032202_250--Hb_001433_100 Hb_034482_040 Hb_034482_040 Hb_032202_250--Hb_034482_040 Hb_002989_040 Hb_002989_040 Hb_032202_250--Hb_002989_040 Hb_000175_130 Hb_000175_130 Hb_000316_100--Hb_000175_130 Hb_000316_100--Hb_010172_100 Hb_006351_110 Hb_006351_110 Hb_000316_100--Hb_006351_110 Hb_005908_040 Hb_005908_040 Hb_000316_100--Hb_005908_040 Hb_000316_100--Hb_027892_040 Hb_000617_110 Hb_000617_110 Hb_183612_080--Hb_000617_110 Hb_001842_120 Hb_001842_120 Hb_183612_080--Hb_001842_120 Hb_004159_050 Hb_004159_050 Hb_183612_080--Hb_004159_050 Hb_000613_170 Hb_000613_170 Hb_183612_080--Hb_000613_170 Hb_010172_100--Hb_005908_040 Hb_010172_100--Hb_006351_110 Hb_005137_020 Hb_005137_020 Hb_010172_100--Hb_005137_020 Hb_001007_050 Hb_001007_050 Hb_010172_100--Hb_001007_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
56.6412 0.746153 1.51714 11.2167 18.0302 23.2895
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
244.095 698.133 120.734 12.9122 10.434

CAGE analysis