Hb_002989_040

Information

Type -
Description -
Location Contig2989: 99491-99715
Sequence    

Annotation

kegg
ID rcu:RCOM_0254780
description hypothetical protein
nr
ID ADR30783.1
description hypothetical protein 1 [Hevea brasiliensis]
swissprot
ID -
description -
trembl
ID I1SN80
description Uncharacterized protein OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31257: 99259-99951
cDNA
(Sanger)
(ID:Location)		 007_M05.ab1: 99273-99828 , 017_G10.ab1: 99259-99828 , 018_J04.ab1: 99259-99829 , 020_G11.ab1: 99259-99828 , 030_E13.ab1: 99259-99829 , 030_K03.ab1: 99307-99829 , 032_J07.ab1: 99307-99829 , 038_B09.ab1: 99273-99828 , 047_D05.ab1: 99259-99829 , 052_B23.ab1: 99259-99829

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002989_040 0.0 - - hypothetical protein 1 [Hevea brasiliensis]
2 Hb_023051_020 0.0973676822 - - -
3 Hb_003226_240 0.1005207247 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
4 Hb_034482_040 0.1063613488 - - aspartate kinase, partial [Francisella tularensis]
5 Hb_001143_070 0.123710127 - - Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 [Theobroma cacao]
6 Hb_000103_030 0.1331428932 - - hypothetical protein VITISV_021700 [Vitis vinifera]
7 Hb_000920_320 0.1448082861 transcription factor TF Family: Orphans hypothetical protein JCGZ_24525 [Jatropha curcas]
8 Hb_001425_070 0.1488918971 - - -
9 Hb_091433_030 0.1548355906 - - -
10 Hb_032202_250 0.1559438538 - - PREDICTED: F-box protein PP2-A13 [Jatropha curcas]
11 Hb_001433_100 0.1595252222 - - PREDICTED: F-box/LRR-repeat protein 3 isoform X1 [Jatropha curcas]
12 Hb_003913_050 0.1600750519 - - 60S ribosomal protein L27B [Hevea brasiliensis]
13 Hb_105602_020 0.1617266649 - - PREDICTED: 60S ribosomal protein L19-1-like [Populus euphratica]
14 Hb_141194_010 0.1685104942 - - PREDICTED: protein ZINC INDUCED FACILITATOR 1-like isoform X2 [Populus euphratica]
15 Hb_089100_050 0.1726680414 - - -
16 Hb_001425_060 0.1757374246 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003060_040 0.1763551907 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL15 [Jatropha curcas]
18 Hb_000258_180 0.1856841266 - - PREDICTED: glutathione S-transferase U10-like [Vitis vinifera]
19 Hb_002478_020 0.1876151091 - - hypothetical protein POPTR_0010s19120g [Populus trichocarpa]
20 Hb_183612_090 0.1898319129 - - -

Gene co-expression network

sample Hb_002989_040 Hb_002989_040 Hb_023051_020 Hb_023051_020 Hb_002989_040--Hb_023051_020 Hb_003226_240 Hb_003226_240 Hb_002989_040--Hb_003226_240 Hb_034482_040 Hb_034482_040 Hb_002989_040--Hb_034482_040 Hb_001143_070 Hb_001143_070 Hb_002989_040--Hb_001143_070 Hb_000103_030 Hb_000103_030 Hb_002989_040--Hb_000103_030 Hb_000920_320 Hb_000920_320 Hb_002989_040--Hb_000920_320 Hb_023051_020--Hb_003226_240 Hb_023051_020--Hb_034482_040 Hb_113635_010 Hb_113635_010 Hb_023051_020--Hb_113635_010 Hb_001425_070 Hb_001425_070 Hb_023051_020--Hb_001425_070 Hb_091433_030 Hb_091433_030 Hb_023051_020--Hb_091433_030 Hb_001433_100 Hb_001433_100 Hb_003226_240--Hb_001433_100 Hb_003226_240--Hb_034482_040 Hb_003226_240--Hb_000920_320 Hb_032202_250 Hb_032202_250 Hb_003226_240--Hb_032202_250 Hb_034482_040--Hb_001433_100 Hb_034482_040--Hb_032202_250 Hb_141194_010 Hb_141194_010 Hb_034482_040--Hb_141194_010 Hb_001143_070--Hb_000103_030 Hb_001348_230 Hb_001348_230 Hb_001143_070--Hb_001348_230 Hb_002290_050 Hb_002290_050 Hb_001143_070--Hb_002290_050 Hb_004942_020 Hb_004942_020 Hb_001143_070--Hb_004942_020 Hb_000352_160 Hb_000352_160 Hb_001143_070--Hb_000352_160 Hb_105602_020 Hb_105602_020 Hb_000103_030--Hb_105602_020 Hb_004461_020 Hb_004461_020 Hb_000103_030--Hb_004461_020 Hb_089100_050 Hb_089100_050 Hb_000103_030--Hb_089100_050 Hb_000103_030--Hb_001425_070 Hb_003913_050 Hb_003913_050 Hb_000920_320--Hb_003913_050 Hb_001396_090 Hb_001396_090 Hb_000920_320--Hb_001396_090 Hb_003060_040 Hb_003060_040 Hb_000920_320--Hb_003060_040 Hb_000270_620 Hb_000270_620 Hb_000920_320--Hb_000270_620
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
59.1617 2.36914 3.41469 5.1751 23.6259 2.42145
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1765.54 5038.55 1535.81 311.167 0

CAGE analysis