Hb_002290_050

Information

Type -
Description -
Location Contig2290: 44605-48877
Sequence    

Annotation

kegg
ID rcu:RCOM_1259250
description hypothetical protein
nr
ID XP_002530531.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID B9SX12
description Casparian strip membrane protein 1 OS=Ricinus communis GN=RCOM_1259250 PE=2 SV=1
trembl
ID A0A067KWI4
description CASP-like protein OS=Jatropha curcas GN=JCGZ_08833 PE=3 SV=1
Gene Ontology
ID GO:0005886
description integral membrane family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002290_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_012586_020 0.1395474123 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
3 Hb_001143_070 0.1404987917 - - Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 [Theobroma cacao]
4 Hb_001186_070 0.142215708 - - PREDICTED: F-box protein FBW2-like [Gossypium raimondii]
5 Hb_113635_010 0.1568747757 - - -
6 Hb_039946_010 0.1607320438 - - hypothetical protein POPTR_0018s09200g [Populus trichocarpa]
7 Hb_004942_020 0.1620041269 - - Potassium transporter, putative [Ricinus communis]
8 Hb_004461_020 0.1799538291 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
9 Hb_000352_160 0.1904573071 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000450_020 0.1953242151 - - conserved hypothetical protein [Ricinus communis]
11 Hb_058143_010 0.1956409805 - - hypothetical protein JCGZ_01992 [Jatropha curcas]
12 Hb_001348_230 0.1995286885 transcription factor TF Family: TRAF protein with unknown function [Ricinus communis]
13 Hb_010589_050 0.1998037538 - - -
14 Hb_003095_070 0.2017154485 - - hypothetical protein POPTR_0009s11230g [Populus trichocarpa]
15 Hb_002989_040 0.2033410713 - - hypothetical protein 1 [Hevea brasiliensis]
16 Hb_002478_020 0.2041841357 - - hypothetical protein POPTR_0010s19120g [Populus trichocarpa]
17 Hb_001425_070 0.2053756071 - - -
18 Hb_012053_040 0.2054078436 - - PREDICTED: putative phospholipid:diacylglycerol acyltransferase 2 [Jatropha curcas]
19 Hb_001922_080 0.2059596324 - - Tellurite resistance protein tehA, putative [Ricinus communis]
20 Hb_113906_010 0.2126983647 - - hypothetical protein JCGZ_18857 [Jatropha curcas]

Gene co-expression network

sample Hb_002290_050 Hb_002290_050 Hb_012586_020 Hb_012586_020 Hb_002290_050--Hb_012586_020 Hb_001143_070 Hb_001143_070 Hb_002290_050--Hb_001143_070 Hb_001186_070 Hb_001186_070 Hb_002290_050--Hb_001186_070 Hb_113635_010 Hb_113635_010 Hb_002290_050--Hb_113635_010 Hb_039946_010 Hb_039946_010 Hb_002290_050--Hb_039946_010 Hb_004942_020 Hb_004942_020 Hb_002290_050--Hb_004942_020 Hb_012586_020--Hb_004942_020 Hb_010589_050 Hb_010589_050 Hb_012586_020--Hb_010589_050 Hb_012586_020--Hb_039946_010 Hb_058143_010 Hb_058143_010 Hb_012586_020--Hb_058143_010 Hb_000352_180 Hb_000352_180 Hb_012586_020--Hb_000352_180 Hb_002989_040 Hb_002989_040 Hb_001143_070--Hb_002989_040 Hb_000103_030 Hb_000103_030 Hb_001143_070--Hb_000103_030 Hb_001348_230 Hb_001348_230 Hb_001143_070--Hb_001348_230 Hb_001143_070--Hb_004942_020 Hb_000352_160 Hb_000352_160 Hb_001143_070--Hb_000352_160 Hb_001922_080 Hb_001922_080 Hb_001186_070--Hb_001922_080 Hb_001186_070--Hb_113635_010 Hb_001433_100 Hb_001433_100 Hb_001186_070--Hb_001433_100 Hb_000329_660 Hb_000329_660 Hb_001186_070--Hb_000329_660 Hb_001842_080 Hb_001842_080 Hb_001186_070--Hb_001842_080 Hb_023051_020 Hb_023051_020 Hb_113635_010--Hb_023051_020 Hb_001373_100 Hb_001373_100 Hb_113635_010--Hb_001373_100 Hb_113635_010--Hb_000329_660 Hb_002326_170 Hb_002326_170 Hb_113635_010--Hb_002326_170 Hb_039946_010--Hb_010589_050 Hb_039946_010--Hb_058143_010 Hb_039946_010--Hb_004942_020 Hb_002478_020 Hb_002478_020 Hb_039946_010--Hb_002478_020 Hb_039946_010--Hb_000352_180 Hb_004942_020--Hb_058143_010 Hb_113906_010 Hb_113906_010 Hb_004942_020--Hb_113906_010 Hb_004942_020--Hb_002478_020 Hb_004942_020--Hb_000352_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0749695 0 0 0.0143652 0.018793 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.299838 0.977091 0.500226 0 0

CAGE analysis