Hb_000352_180

Information

Type -
Description -
Location Contig352: 182061-182684
Sequence    

Annotation

kegg
ID rcu:RCOM_1443920
description hypothetical protein
nr
ID XP_002512796.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RGT7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1443920 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36568: 181992-182912
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000352_180 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_010589_050 0.1028781676 - - -
3 Hb_058143_010 0.1248717957 - - hypothetical protein JCGZ_01992 [Jatropha curcas]
4 Hb_004942_020 0.1402713555 - - Potassium transporter, putative [Ricinus communis]
5 Hb_012586_020 0.1438637772 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
6 Hb_039946_010 0.1593053624 - - hypothetical protein POPTR_0018s09200g [Populus trichocarpa]
7 Hb_113906_010 0.1811729481 - - hypothetical protein JCGZ_18857 [Jatropha curcas]
8 Hb_001396_090 0.1813808339 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 75 [Jatropha curcas]
9 Hb_148850_010 0.1865314408 - - PREDICTED: potassium transporter 5-like [Jatropha curcas]
10 Hb_000103_550 0.1914750794 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 2 isoform X1 [Jatropha curcas]
11 Hb_000340_440 0.1937139319 - - PREDICTED: gibberellin receptor GID1B [Jatropha curcas]
12 Hb_002478_020 0.1984749557 - - hypothetical protein POPTR_0010s19120g [Populus trichocarpa]
13 Hb_061383_010 0.1988919213 - - beta-1,3-glucanase [Hevea brasiliensis]
14 Hb_000352_160 0.202535437 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000316_100 0.2039205484 - - protein with unknown function [Ricinus communis]
16 Hb_001348_230 0.2041844279 transcription factor TF Family: TRAF protein with unknown function [Ricinus communis]
17 Hb_000033_040 0.2047517131 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002588_040 0.206980387 - - Pathogenesis-related protein 1 [Theobroma cacao]
19 Hb_002067_140 0.20912208 - - -
20 Hb_000042_100 0.2098359745 - - PREDICTED: uncharacterized protein LOC104448410 [Eucalyptus grandis]

Gene co-expression network

sample Hb_000352_180 Hb_000352_180 Hb_010589_050 Hb_010589_050 Hb_000352_180--Hb_010589_050 Hb_058143_010 Hb_058143_010 Hb_000352_180--Hb_058143_010 Hb_004942_020 Hb_004942_020 Hb_000352_180--Hb_004942_020 Hb_012586_020 Hb_012586_020 Hb_000352_180--Hb_012586_020 Hb_039946_010 Hb_039946_010 Hb_000352_180--Hb_039946_010 Hb_113906_010 Hb_113906_010 Hb_000352_180--Hb_113906_010 Hb_010589_050--Hb_012586_020 Hb_010589_050--Hb_039946_010 Hb_010589_050--Hb_058143_010 Hb_010589_050--Hb_004942_020 Hb_000352_160 Hb_000352_160 Hb_010589_050--Hb_000352_160 Hb_058143_010--Hb_004942_020 Hb_058143_010--Hb_012586_020 Hb_002478_020 Hb_002478_020 Hb_058143_010--Hb_002478_020 Hb_000316_100 Hb_000316_100 Hb_058143_010--Hb_000316_100 Hb_004942_020--Hb_012586_020 Hb_004942_020--Hb_113906_010 Hb_004942_020--Hb_002478_020 Hb_001143_070 Hb_001143_070 Hb_004942_020--Hb_001143_070 Hb_012586_020--Hb_039946_010 Hb_002290_050 Hb_002290_050 Hb_012586_020--Hb_002290_050 Hb_039946_010--Hb_058143_010 Hb_039946_010--Hb_004942_020 Hb_039946_010--Hb_002478_020 Hb_091433_040 Hb_091433_040 Hb_113906_010--Hb_091433_040 Hb_113906_010--Hb_012586_020 Hb_005914_070 Hb_005914_070 Hb_113906_010--Hb_005914_070 Hb_012053_040 Hb_012053_040 Hb_113906_010--Hb_012053_040 Hb_003095_070 Hb_003095_070 Hb_113906_010--Hb_003095_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.3641 0.230305 1.33591 0.864832 14.1152 2.99365
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.0164 174.98 73.6453 16.183 0.29169

CAGE analysis