Hb_004942_020

Information

Type -
Description -
Location Contig4942: 21636-25446
Sequence    

Annotation

kegg
ID rcu:RCOM_0238060
description Potassium transporter, putative
nr
ID XP_002528161.1
description Potassium transporter, putative [Ricinus communis]
swissprot
ID Q6H4L9
description Potassium transporter 20 OS=Oryza sativa subsp. japonica GN=HAK20 PE=2 SV=1
trembl
ID B9SQ92
description Potassium transporter OS=Ricinus communis GN=RCOM_0238060 PE=3 SV=1
Gene Ontology
ID GO:0016021
description potassium transporter 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004942_020 0.0 - - Potassium transporter, putative [Ricinus communis]
2 Hb_058143_010 0.0870516755 - - hypothetical protein JCGZ_01992 [Jatropha curcas]
3 Hb_012586_020 0.0989715962 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
4 Hb_113906_010 0.1119850449 - - hypothetical protein JCGZ_18857 [Jatropha curcas]
5 Hb_002478_020 0.1329229575 - - hypothetical protein POPTR_0010s19120g [Populus trichocarpa]
6 Hb_000352_180 0.1402713555 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001143_070 0.1405291483 - - Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 [Theobroma cacao]
8 Hb_010589_050 0.1446711622 - - -
9 Hb_039946_010 0.157850476 - - hypothetical protein POPTR_0018s09200g [Populus trichocarpa]
10 Hb_002290_050 0.1620041269 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003095_070 0.1679737211 - - hypothetical protein POPTR_0009s11230g [Populus trichocarpa]
12 Hb_012053_040 0.1792095384 - - PREDICTED: putative phospholipid:diacylglycerol acyltransferase 2 [Jatropha curcas]
13 Hb_148850_010 0.1798020608 - - PREDICTED: potassium transporter 5-like [Jatropha curcas]
14 Hb_001396_090 0.1800873282 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 75 [Jatropha curcas]
15 Hb_089100_050 0.1805996184 - - -
16 Hb_000352_160 0.1835341671 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000316_100 0.1845655851 - - protein with unknown function [Ricinus communis]
18 Hb_000103_550 0.1865666361 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 2 isoform X1 [Jatropha curcas]
19 Hb_001348_230 0.1873292511 transcription factor TF Family: TRAF protein with unknown function [Ricinus communis]
20 Hb_001776_170 0.1931220019 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004942_020 Hb_004942_020 Hb_058143_010 Hb_058143_010 Hb_004942_020--Hb_058143_010 Hb_012586_020 Hb_012586_020 Hb_004942_020--Hb_012586_020 Hb_113906_010 Hb_113906_010 Hb_004942_020--Hb_113906_010 Hb_002478_020 Hb_002478_020 Hb_004942_020--Hb_002478_020 Hb_000352_180 Hb_000352_180 Hb_004942_020--Hb_000352_180 Hb_001143_070 Hb_001143_070 Hb_004942_020--Hb_001143_070 Hb_058143_010--Hb_000352_180 Hb_010589_050 Hb_010589_050 Hb_058143_010--Hb_010589_050 Hb_058143_010--Hb_012586_020 Hb_058143_010--Hb_002478_020 Hb_000316_100 Hb_000316_100 Hb_058143_010--Hb_000316_100 Hb_012586_020--Hb_010589_050 Hb_039946_010 Hb_039946_010 Hb_012586_020--Hb_039946_010 Hb_002290_050 Hb_002290_050 Hb_012586_020--Hb_002290_050 Hb_012586_020--Hb_000352_180 Hb_091433_040 Hb_091433_040 Hb_113906_010--Hb_091433_040 Hb_113906_010--Hb_012586_020 Hb_005914_070 Hb_005914_070 Hb_113906_010--Hb_005914_070 Hb_012053_040 Hb_012053_040 Hb_113906_010--Hb_012053_040 Hb_003095_070 Hb_003095_070 Hb_113906_010--Hb_003095_070 Hb_002478_020--Hb_039946_010 Hb_002478_020--Hb_001143_070 Hb_000920_320 Hb_000920_320 Hb_002478_020--Hb_000920_320 Hb_002478_020--Hb_012586_020 Hb_000352_180--Hb_010589_050 Hb_000352_180--Hb_039946_010 Hb_000352_180--Hb_113906_010 Hb_002989_040 Hb_002989_040 Hb_001143_070--Hb_002989_040 Hb_000103_030 Hb_000103_030 Hb_001143_070--Hb_000103_030 Hb_001348_230 Hb_001348_230 Hb_001143_070--Hb_001348_230 Hb_001143_070--Hb_002290_050 Hb_000352_160 Hb_000352_160 Hb_001143_070--Hb_000352_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.11774 1.26038 0.107295 0.321002 3.86924 0.572283
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.9679 54.8698 27.9476 1.69348 0.0724464

CAGE analysis