Hb_000920_320

Information

Type transcription factor
Description TF Family: Orphans
Location Contig920: 213596-214673
Sequence    

Annotation

kegg
ID pop:POPTR_0003s19710g
description POPTRDRAFT_693167B; hypothetical protein
nr
ID KDP40526.1
description hypothetical protein JCGZ_24525 [Jatropha curcas]
swissprot
ID O80366
description Two-component response regulator ARR9 OS=Arabidopsis thaliana GN=ARR9 PE=1 SV=1
trembl
ID A0A067KWD7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24525 PE=4 SV=1
Gene Ontology
ID GO:0005622
description two-component response regulator arr9-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62445: 213628-214499
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000920_320 0.0 transcription factor TF Family: Orphans hypothetical protein JCGZ_24525 [Jatropha curcas]
2 Hb_003913_050 0.1180997228 - - 60S ribosomal protein L27B [Hevea brasiliensis]
3 Hb_001396_090 0.1196130031 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 75 [Jatropha curcas]
4 Hb_003226_240 0.1248101063 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
5 Hb_003060_040 0.1424292831 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL15 [Jatropha curcas]
6 Hb_002989_040 0.1448082861 - - hypothetical protein 1 [Hevea brasiliensis]
7 Hb_000270_620 0.1454999756 - - PREDICTED: succinate dehydrogenase subunit 7B, mitochondrial-like isoform X1 [Jatropha curcas]
8 Hb_004159_050 0.1525504836 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000103_550 0.1542007133 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 2 isoform X1 [Jatropha curcas]
10 Hb_002478_020 0.1632089715 - - hypothetical protein POPTR_0010s19120g [Populus trichocarpa]
11 Hb_001433_100 0.1717627504 - - PREDICTED: F-box/LRR-repeat protein 3 isoform X1 [Jatropha curcas]
12 Hb_034482_040 0.1789011652 - - aspartate kinase, partial [Francisella tularensis]
13 Hb_091433_030 0.1796562832 - - -
14 Hb_001143_070 0.1810039904 - - Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 [Theobroma cacao]
15 Hb_023051_020 0.1810494075 - - -
16 Hb_000592_060 0.1839408307 - - PREDICTED: ras-related protein RABA6a [Populus euphratica]
17 Hb_183612_090 0.1892605 - - -
18 Hb_141194_010 0.1896761502 - - PREDICTED: protein ZINC INDUCED FACILITATOR 1-like isoform X2 [Populus euphratica]
19 Hb_032202_250 0.1900757425 - - PREDICTED: F-box protein PP2-A13 [Jatropha curcas]
20 Hb_001579_140 0.1907100876 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO2 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000920_320 Hb_000920_320 Hb_003913_050 Hb_003913_050 Hb_000920_320--Hb_003913_050 Hb_001396_090 Hb_001396_090 Hb_000920_320--Hb_001396_090 Hb_003226_240 Hb_003226_240 Hb_000920_320--Hb_003226_240 Hb_003060_040 Hb_003060_040 Hb_000920_320--Hb_003060_040 Hb_002989_040 Hb_002989_040 Hb_000920_320--Hb_002989_040 Hb_000270_620 Hb_000270_620 Hb_000920_320--Hb_000270_620 Hb_003913_050--Hb_001396_090 Hb_000103_550 Hb_000103_550 Hb_003913_050--Hb_000103_550 Hb_003913_050--Hb_003226_240 Hb_004159_050 Hb_004159_050 Hb_003913_050--Hb_004159_050 Hb_003913_050--Hb_000270_620 Hb_001396_090--Hb_000103_550 Hb_001396_090--Hb_000270_620 Hb_061383_010 Hb_061383_010 Hb_001396_090--Hb_061383_010 Hb_001776_170 Hb_001776_170 Hb_001396_090--Hb_001776_170 Hb_003226_240--Hb_002989_040 Hb_001433_100 Hb_001433_100 Hb_003226_240--Hb_001433_100 Hb_034482_040 Hb_034482_040 Hb_003226_240--Hb_034482_040 Hb_023051_020 Hb_023051_020 Hb_003226_240--Hb_023051_020 Hb_032202_250 Hb_032202_250 Hb_003226_240--Hb_032202_250 Hb_091433_030 Hb_091433_030 Hb_003060_040--Hb_091433_030 Hb_003060_040--Hb_000270_620 Hb_003060_040--Hb_001433_100 Hb_003060_040--Hb_003226_240 Hb_003060_040--Hb_003913_050 Hb_002989_040--Hb_023051_020 Hb_002989_040--Hb_034482_040 Hb_001143_070 Hb_001143_070 Hb_002989_040--Hb_001143_070 Hb_000103_030 Hb_000103_030 Hb_002989_040--Hb_000103_030 Hb_000270_620--Hb_000103_550 Hb_000123_160 Hb_000123_160 Hb_000270_620--Hb_000123_160 Hb_000318_490 Hb_000318_490 Hb_000270_620--Hb_000318_490 Hb_000270_620--Hb_004159_050 Hb_004545_130 Hb_004545_130 Hb_000270_620--Hb_004545_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.0947 2.19375 0.0239184 1.47141 0.692308 2.90492
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.6809 90.5294 28.4121 11.2776 0

CAGE analysis