Hb_001396_090

Information

Type transcription factor
Description TF Family: WRKY
Location Contig1396: 58811-60722
Sequence    

Annotation

kegg
ID rcu:RCOM_1079400
description WRKY transcription factor, putative
nr
ID XP_012085719.1
description PREDICTED: probable WRKY transcription factor 75 [Jatropha curcas]
swissprot
ID Q9FYA2
description Probable WRKY transcription factor 75 OS=Arabidopsis thaliana GN=WRKY75 PE=2 SV=1
trembl
ID S5CKE7
description Uncharacterized protein OS=Jatropha curcas GN=WRKY17 PE=4 SV=1
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 75

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001396_090 0.0 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 75 [Jatropha curcas]
2 Hb_000920_320 0.1196130031 transcription factor TF Family: Orphans hypothetical protein JCGZ_24525 [Jatropha curcas]
3 Hb_000103_550 0.1337336274 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 2 isoform X1 [Jatropha curcas]
4 Hb_003913_050 0.1422456949 - - 60S ribosomal protein L27B [Hevea brasiliensis]
5 Hb_000270_620 0.1568665418 - - PREDICTED: succinate dehydrogenase subunit 7B, mitochondrial-like isoform X1 [Jatropha curcas]
6 Hb_061383_010 0.1640512477 - - beta-1,3-glucanase [Hevea brasiliensis]
7 Hb_001776_170 0.1647262501 - - conserved hypothetical protein [Ricinus communis]
8 Hb_086692_020 0.1735120911 - - PREDICTED: protein kinase APK1B, chloroplastic-like [Jatropha curcas]
9 Hb_002478_020 0.1746635095 - - hypothetical protein POPTR_0010s19120g [Populus trichocarpa]
10 Hb_004942_020 0.1800873282 - - Potassium transporter, putative [Ricinus communis]
11 Hb_000352_180 0.1813808339 - - conserved hypothetical protein [Ricinus communis]
12 Hb_058143_010 0.1821648802 - - hypothetical protein JCGZ_01992 [Jatropha curcas]
13 Hb_000045_210 0.1834019126 - - -
14 Hb_003060_040 0.1856127717 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL15 [Jatropha curcas]
15 Hb_003226_240 0.1866669031 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
16 Hb_010589_050 0.1909882248 - - -
17 Hb_003398_140 0.1929618503 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
18 Hb_002067_140 0.1932288991 - - -
19 Hb_089100_050 0.193484626 - - -
20 Hb_000094_110 0.198118241 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001396_090 Hb_001396_090 Hb_000920_320 Hb_000920_320 Hb_001396_090--Hb_000920_320 Hb_000103_550 Hb_000103_550 Hb_001396_090--Hb_000103_550 Hb_003913_050 Hb_003913_050 Hb_001396_090--Hb_003913_050 Hb_000270_620 Hb_000270_620 Hb_001396_090--Hb_000270_620 Hb_061383_010 Hb_061383_010 Hb_001396_090--Hb_061383_010 Hb_001776_170 Hb_001776_170 Hb_001396_090--Hb_001776_170 Hb_000920_320--Hb_003913_050 Hb_003226_240 Hb_003226_240 Hb_000920_320--Hb_003226_240 Hb_003060_040 Hb_003060_040 Hb_000920_320--Hb_003060_040 Hb_002989_040 Hb_002989_040 Hb_000920_320--Hb_002989_040 Hb_000920_320--Hb_000270_620 Hb_000103_550--Hb_000270_620 Hb_000318_490 Hb_000318_490 Hb_000103_550--Hb_000318_490 Hb_001159_200 Hb_001159_200 Hb_000103_550--Hb_001159_200 Hb_003095_070 Hb_003095_070 Hb_000103_550--Hb_003095_070 Hb_006351_110 Hb_006351_110 Hb_000103_550--Hb_006351_110 Hb_003913_050--Hb_000103_550 Hb_003913_050--Hb_003226_240 Hb_004159_050 Hb_004159_050 Hb_003913_050--Hb_004159_050 Hb_003913_050--Hb_000270_620 Hb_000123_160 Hb_000123_160 Hb_000270_620--Hb_000123_160 Hb_000270_620--Hb_000318_490 Hb_000270_620--Hb_004159_050 Hb_004545_130 Hb_004545_130 Hb_000270_620--Hb_004545_130 Hb_012305_020 Hb_012305_020 Hb_061383_010--Hb_012305_020 Hb_086692_020 Hb_086692_020 Hb_061383_010--Hb_086692_020 Hb_002150_050 Hb_002150_050 Hb_061383_010--Hb_002150_050 Hb_038134_010 Hb_038134_010 Hb_061383_010--Hb_038134_010 Hb_183612_090 Hb_183612_090 Hb_061383_010--Hb_183612_090 Hb_002067_140 Hb_002067_140 Hb_001776_170--Hb_002067_140 Hb_001369_600 Hb_001369_600 Hb_001776_170--Hb_001369_600 Hb_012053_050 Hb_012053_050 Hb_001776_170--Hb_012053_050 Hb_001511_140 Hb_001511_140 Hb_001776_170--Hb_001511_140 Hb_002759_240 Hb_002759_240 Hb_001776_170--Hb_002759_240 Hb_000979_250 Hb_000979_250 Hb_001776_170--Hb_000979_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.42862 2.4469 0.272816 1.21837 3.46981 2.54534
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.5989 81.733 31.1464 14.0106 0.499683

CAGE analysis