Hb_012053_050

Information

Type -
Description -
Location Contig12053: 48097-53362
Sequence    

Annotation

kegg
ID tcc:TCM_041534
description UDP-D-apiose/UDP-D-xylose synthase 2
nr
ID XP_012076170.1
description PREDICTED: UDP-D-apiose/UDP-D-xylose synthase 2 [Jatropha curcas]
swissprot
ID Q9ZUY6
description UDP-D-apiose/UDP-D-xylose synthase 1 OS=Arabidopsis thaliana GN=AXS1 PE=1 SV=1
trembl
ID A0A067KH84
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11236 PE=4 SV=1
Gene Ontology
ID GO:0003824
description udp-d-apiose udp-d-xylose synthase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06377: 48363-52570 , PASA_asmbl_06378: 50576-51081 , PASA_asmbl_06379: 50191-50520 , PASA_asmbl_06380: 49605-49861
cDNA
(Sanger)
(ID:Location)		 016_J12.ab1: 48525-51023 , 019_N16.ab1: 48525-51219

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012053_050 0.0 - - PREDICTED: UDP-D-apiose/UDP-D-xylose synthase 2 [Jatropha curcas]
2 Hb_001369_600 0.1206114848 - - kinase, putative [Ricinus communis]
3 Hb_001776_170 0.1270625868 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000589_160 0.1310484853 - - PREDICTED: expansin-A4 [Jatropha curcas]
5 Hb_000373_180 0.1316574972 transcription factor TF Family: Trihelix hypothetical protein JCGZ_25182 [Jatropha curcas]
6 Hb_002759_240 0.1345957087 - - hypothetical protein EUGRSUZ_E01319 [Eucalyptus grandis]
7 Hb_001488_370 0.1357168549 - - Esterase PIR7B, putative [Ricinus communis]
8 Hb_146225_010 0.1381805418 - - mitochondrial inner membrane protease subunit, putative [Ricinus communis]
9 Hb_002105_030 0.1424522881 - - -
10 Hb_002067_140 0.1461967974 - - -
11 Hb_012053_010 0.1473220369 - - srpk, putative [Ricinus communis]
12 Hb_002344_070 0.1529238807 - - PREDICTED: proteasome subunit alpha type-6 [Jatropha curcas]
13 Hb_138455_010 0.1533752893 - - UDP-glucosyltransferase, putative [Ricinus communis]
14 Hb_002298_050 0.1535554165 - - serine/threonine-protein kinase, putative [Ricinus communis]
15 Hb_001052_030 0.1554811175 - - PREDICTED: protein TIC 20-IV, chloroplastic [Jatropha curcas]
16 Hb_001846_070 0.155767681 - - PREDICTED: fructokinase-1 [Jatropha curcas]
17 Hb_000239_030 0.1561605621 - - PREDICTED: mitochondrial outer membrane protein porin 2-like [Jatropha curcas]
18 Hb_012545_050 0.1565482536 - - PREDICTED: serine carboxypeptidase II-3-like [Jatropha curcas]
19 Hb_000264_020 0.1571604694 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]
20 Hb_000330_070 0.1588767657 - - PREDICTED: proteasome subunit alpha type-1-B-like [Gossypium raimondii]

Gene co-expression network

sample Hb_012053_050 Hb_012053_050 Hb_001369_600 Hb_001369_600 Hb_012053_050--Hb_001369_600 Hb_001776_170 Hb_001776_170 Hb_012053_050--Hb_001776_170 Hb_000589_160 Hb_000589_160 Hb_012053_050--Hb_000589_160 Hb_000373_180 Hb_000373_180 Hb_012053_050--Hb_000373_180 Hb_002759_240 Hb_002759_240 Hb_012053_050--Hb_002759_240 Hb_001488_370 Hb_001488_370 Hb_012053_050--Hb_001488_370 Hb_002067_140 Hb_002067_140 Hb_001369_600--Hb_002067_140 Hb_001369_600--Hb_001776_170 Hb_001369_600--Hb_001488_370 Hb_007426_050 Hb_007426_050 Hb_001369_600--Hb_007426_050 Hb_001369_600--Hb_000589_160 Hb_001776_170--Hb_002067_140 Hb_001511_140 Hb_001511_140 Hb_001776_170--Hb_001511_140 Hb_001776_170--Hb_002759_240 Hb_000979_250 Hb_000979_250 Hb_001776_170--Hb_000979_250 Hb_012053_010 Hb_012053_010 Hb_000589_160--Hb_012053_010 Hb_004100_090 Hb_004100_090 Hb_000589_160--Hb_004100_090 Hb_002105_030 Hb_002105_030 Hb_000589_160--Hb_002105_030 Hb_027337_120 Hb_027337_120 Hb_000589_160--Hb_027337_120 Hb_000264_020 Hb_000264_020 Hb_000373_180--Hb_000264_020 Hb_002298_050 Hb_002298_050 Hb_000373_180--Hb_002298_050 Hb_146225_010 Hb_146225_010 Hb_000373_180--Hb_146225_010 Hb_001894_170 Hb_001894_170 Hb_000373_180--Hb_001894_170 Hb_003326_020 Hb_003326_020 Hb_000373_180--Hb_003326_020 Hb_002759_240--Hb_001894_170 Hb_001846_070 Hb_001846_070 Hb_002759_240--Hb_001846_070 Hb_002759_240--Hb_000264_020 Hb_002759_240--Hb_146225_010 Hb_005841_040 Hb_005841_040 Hb_002759_240--Hb_005841_040 Hb_001052_030 Hb_001052_030 Hb_002759_240--Hb_001052_030 Hb_012545_050 Hb_012545_050 Hb_001488_370--Hb_012545_050 Hb_000997_190 Hb_000997_190 Hb_001488_370--Hb_000997_190 Hb_001437_130 Hb_001437_130 Hb_001488_370--Hb_001437_130 Hb_001488_370--Hb_001776_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
51.4597 29.8874 47.8507 50.5849 42.8284 20.8849
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
110.465 530.369 331.622 52.7699 21.3051

CAGE analysis