Hb_001437_130

Information

Type -
Description -
Location Contig1437: 115694-122230
Sequence    

Annotation

kegg
ID rcu:RCOM_0875760
description hypothetical protein
nr
ID KHG09222.1
description hypothetical protein F383_15788 [Gossypium arboreum]
swissprot
ID Q9FJH9
description P-loop NTPase domain-containing protein LPA1 homolog 1 OS=Arabidopsis thaliana GN=At5g60760 PE=2 SV=1
trembl
ID A0A0B0N9A0
description Uncharacterized protein OS=Gossypium arboreum GN=F383_15788 PE=4 SV=1
Gene Ontology
ID GO:0016787
description p-loop ntpase domain-containing protein lpa1 homolog 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11524: 115702-122105 , PASA_asmbl_11525: 115866-121939
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001437_130 0.0 - - hypothetical protein F383_15788 [Gossypium arboreum]
2 Hb_000009_450 0.130167139 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Jatropha curcas]
3 Hb_012545_050 0.1336594116 - - PREDICTED: serine carboxypeptidase II-3-like [Jatropha curcas]
4 Hb_003777_050 0.1370497512 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105629120 [Jatropha curcas]
5 Hb_000110_320 0.138367367 - - PREDICTED: ceramide-1-phosphate transfer protein [Jatropha curcas]
6 Hb_001488_370 0.1467155205 - - Esterase PIR7B, putative [Ricinus communis]
7 Hb_001235_110 0.1540947508 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
8 Hb_005686_050 0.1551036656 - - PREDICTED: probable tyrosine-protein phosphatase At1g05000 [Jatropha curcas]
9 Hb_000997_190 0.155247524 - - PREDICTED: magnesium transporter MRS2-I-like [Jatropha curcas]
10 Hb_001956_070 0.16113386 - - PREDICTED: telomere repeat-binding protein 2 isoform X2 [Jatropha curcas]
11 Hb_000117_090 0.1652597235 - - PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
12 Hb_001172_120 0.1659822213 - - hypothetical protein B456_012G082000 [Gossypium raimondii]
13 Hb_002231_030 0.1705887859 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
14 Hb_000366_090 0.1754541872 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32430, mitochondrial [Jatropha curcas]
15 Hb_008948_040 0.1822521854 - - grr1, plant, putative [Ricinus communis]
16 Hb_002284_200 0.1826159139 - - PREDICTED: probable protein phosphatase 2C 27 isoform X1 [Jatropha curcas]
17 Hb_168319_030 0.1832255808 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
18 Hb_000392_380 0.1836727205 - - ubiquitin-conjugating enzyme [Medicago truncatula]
19 Hb_012053_050 0.1859175893 - - PREDICTED: UDP-D-apiose/UDP-D-xylose synthase 2 [Jatropha curcas]
20 Hb_000140_360 0.1861921932 - - PREDICTED: uncharacterized protein LOC105642906 [Jatropha curcas]

Gene co-expression network

sample Hb_001437_130 Hb_001437_130 Hb_000009_450 Hb_000009_450 Hb_001437_130--Hb_000009_450 Hb_012545_050 Hb_012545_050 Hb_001437_130--Hb_012545_050 Hb_003777_050 Hb_003777_050 Hb_001437_130--Hb_003777_050 Hb_000110_320 Hb_000110_320 Hb_001437_130--Hb_000110_320 Hb_001488_370 Hb_001488_370 Hb_001437_130--Hb_001488_370 Hb_001235_110 Hb_001235_110 Hb_001437_130--Hb_001235_110 Hb_004375_150 Hb_004375_150 Hb_000009_450--Hb_004375_150 Hb_000117_090 Hb_000117_090 Hb_000009_450--Hb_000117_090 Hb_000033_020 Hb_000033_020 Hb_000009_450--Hb_000033_020 Hb_141990_040 Hb_141990_040 Hb_000009_450--Hb_141990_040 Hb_012760_070 Hb_012760_070 Hb_000009_450--Hb_012760_070 Hb_008566_050 Hb_008566_050 Hb_000009_450--Hb_008566_050 Hb_012545_050--Hb_001488_370 Hb_000264_020 Hb_000264_020 Hb_012545_050--Hb_000264_020 Hb_000373_180 Hb_000373_180 Hb_012545_050--Hb_000373_180 Hb_000392_380 Hb_000392_380 Hb_012545_050--Hb_000392_380 Hb_000239_030 Hb_000239_030 Hb_012545_050--Hb_000239_030 Hb_003777_050--Hb_000009_450 Hb_003777_050--Hb_000110_320 Hb_024468_020 Hb_024468_020 Hb_003777_050--Hb_024468_020 Hb_001856_200 Hb_001856_200 Hb_003777_050--Hb_001856_200 Hb_003777_050--Hb_141990_040 Hb_000366_090 Hb_000366_090 Hb_000110_320--Hb_000366_090 Hb_001956_070 Hb_001956_070 Hb_000110_320--Hb_001956_070 Hb_000110_320--Hb_000117_090 Hb_168319_030 Hb_168319_030 Hb_000110_320--Hb_168319_030 Hb_000175_060 Hb_000175_060 Hb_000110_320--Hb_000175_060 Hb_011173_050 Hb_011173_050 Hb_000110_320--Hb_011173_050 Hb_012053_050 Hb_012053_050 Hb_001488_370--Hb_012053_050 Hb_001369_600 Hb_001369_600 Hb_001488_370--Hb_001369_600 Hb_000997_190 Hb_000997_190 Hb_001488_370--Hb_000997_190 Hb_001776_170 Hb_001776_170 Hb_001488_370--Hb_001776_170 Hb_000069_700 Hb_000069_700 Hb_001235_110--Hb_000069_700 Hb_001172_120 Hb_001172_120 Hb_001235_110--Hb_001172_120 Hb_000330_070 Hb_000330_070 Hb_001235_110--Hb_000330_070 Hb_000802_100 Hb_000802_100 Hb_001235_110--Hb_000802_100 Hb_116349_110 Hb_116349_110 Hb_001235_110--Hb_116349_110 Hb_000975_320 Hb_000975_320 Hb_001235_110--Hb_000975_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.95685 37.7553 22.3917 13.8374 11.4297 10.0062
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.1348 102.417 89.8823 10.9784 8.54992

CAGE analysis