Hb_012545_050

Information

Type -
Description -
Location Contig12545: 32786-38944
Sequence    

Annotation

kegg
ID vvi:100255855
description serine carboxypeptidase II-3-like
nr
ID XP_012071699.1
description PREDICTED: serine carboxypeptidase II-3-like [Jatropha curcas]
swissprot
ID Q0WRX3
description Serine carboxypeptidase-like 40 OS=Arabidopsis thaliana GN=SCPL40 PE=2 SV=2
trembl
ID A0A067KQA4
description Carboxypeptidase OS=Jatropha curcas GN=JCGZ_04316 PE=3 SV=1
Gene Ontology
ID GO:0004185
description serine carboxypeptidase ii-3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07814: 33001-34438
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012545_050 0.0 - - PREDICTED: serine carboxypeptidase II-3-like [Jatropha curcas]
2 Hb_001488_370 0.114583572 - - Esterase PIR7B, putative [Ricinus communis]
3 Hb_000264_020 0.133542817 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]
4 Hb_001437_130 0.1336594116 - - hypothetical protein F383_15788 [Gossypium arboreum]
5 Hb_000373_180 0.1357959285 transcription factor TF Family: Trihelix hypothetical protein JCGZ_25182 [Jatropha curcas]
6 Hb_000392_380 0.1381569245 - - ubiquitin-conjugating enzyme [Medicago truncatula]
7 Hb_000239_030 0.139647229 - - PREDICTED: mitochondrial outer membrane protein porin 2-like [Jatropha curcas]
8 Hb_001157_010 0.1422108919 - - deoxyhypusine synthase, putative [Ricinus communis]
9 Hb_001369_450 0.1425253845 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
10 Hb_000110_320 0.1436158013 - - PREDICTED: ceramide-1-phosphate transfer protein [Jatropha curcas]
11 Hb_017987_060 0.1441014622 - - hypothetical protein JCGZ_15971 [Jatropha curcas]
12 Hb_001172_120 0.1473987621 - - hypothetical protein B456_012G082000 [Gossypium raimondii]
13 Hb_000001_070 0.1527852496 - - -
14 Hb_001232_140 0.1530103262 - - PREDICTED: uncharacterized protein LOC105634966 [Jatropha curcas]
15 Hb_000260_310 0.1530530846 - - PREDICTED: uncharacterized protein LOC105649060 [Jatropha curcas]
16 Hb_001956_070 0.1531888306 - - PREDICTED: telomere repeat-binding protein 2 isoform X2 [Jatropha curcas]
17 Hb_012053_050 0.1565482536 - - PREDICTED: UDP-D-apiose/UDP-D-xylose synthase 2 [Jatropha curcas]
18 Hb_000141_020 0.1572155403 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 6 [Pyrus x bretschneideri]
19 Hb_146225_010 0.1598183064 - - mitochondrial inner membrane protease subunit, putative [Ricinus communis]
20 Hb_002374_400 0.1605866653 transcription factor TF Family: TRAF protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_012545_050 Hb_012545_050 Hb_001488_370 Hb_001488_370 Hb_012545_050--Hb_001488_370 Hb_000264_020 Hb_000264_020 Hb_012545_050--Hb_000264_020 Hb_001437_130 Hb_001437_130 Hb_012545_050--Hb_001437_130 Hb_000373_180 Hb_000373_180 Hb_012545_050--Hb_000373_180 Hb_000392_380 Hb_000392_380 Hb_012545_050--Hb_000392_380 Hb_000239_030 Hb_000239_030 Hb_012545_050--Hb_000239_030 Hb_012053_050 Hb_012053_050 Hb_001488_370--Hb_012053_050 Hb_001369_600 Hb_001369_600 Hb_001488_370--Hb_001369_600 Hb_000997_190 Hb_000997_190 Hb_001488_370--Hb_000997_190 Hb_001488_370--Hb_001437_130 Hb_001776_170 Hb_001776_170 Hb_001488_370--Hb_001776_170 Hb_000264_020--Hb_000373_180 Hb_146225_010 Hb_146225_010 Hb_000264_020--Hb_146225_010 Hb_000260_310 Hb_000260_310 Hb_000264_020--Hb_000260_310 Hb_005841_050 Hb_005841_050 Hb_000264_020--Hb_005841_050 Hb_001846_070 Hb_001846_070 Hb_000264_020--Hb_001846_070 Hb_002759_240 Hb_002759_240 Hb_000264_020--Hb_002759_240 Hb_000009_450 Hb_000009_450 Hb_001437_130--Hb_000009_450 Hb_003777_050 Hb_003777_050 Hb_001437_130--Hb_003777_050 Hb_000110_320 Hb_000110_320 Hb_001437_130--Hb_000110_320 Hb_001235_110 Hb_001235_110 Hb_001437_130--Hb_001235_110 Hb_002298_050 Hb_002298_050 Hb_000373_180--Hb_002298_050 Hb_000373_180--Hb_146225_010 Hb_001894_170 Hb_001894_170 Hb_000373_180--Hb_001894_170 Hb_000373_180--Hb_012053_050 Hb_003326_020 Hb_003326_020 Hb_000373_180--Hb_003326_020 Hb_114310_080 Hb_114310_080 Hb_000392_380--Hb_114310_080 Hb_000115_230 Hb_000115_230 Hb_000392_380--Hb_000115_230 Hb_000019_070 Hb_000019_070 Hb_000392_380--Hb_000019_070 Hb_001172_120 Hb_001172_120 Hb_000392_380--Hb_001172_120 Hb_029388_030 Hb_029388_030 Hb_000392_380--Hb_029388_030 Hb_007192_100 Hb_007192_100 Hb_000392_380--Hb_007192_100 Hb_000239_030--Hb_000115_230 Hb_001157_010 Hb_001157_010 Hb_000239_030--Hb_001157_010 Hb_000239_030--Hb_003326_020 Hb_000915_120 Hb_000915_120 Hb_000239_030--Hb_000915_120 Hb_000236_150 Hb_000236_150 Hb_000239_030--Hb_000236_150 Hb_002217_450 Hb_002217_450 Hb_000239_030--Hb_002217_450
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.311685 0.617831 0.385153 0.654628 0.144798 0.333294
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.23353 2.91201 2.68247 0.420729 0.135973

CAGE analysis