Hb_002298_050

Information

Type -
Description -
Location Contig2298: 157311-163651
Sequence    

Annotation

kegg
ID rcu:RCOM_1590280
description serine/threonine-protein kinase, putative (EC:2.7.11.13)
nr
ID XP_002510211.1
description serine/threonine-protein kinase, putative [Ricinus communis]
swissprot
ID Q9NBK5
description Serine/threonine-protein kinase tricorner OS=Drosophila melanogaster GN=trc PE=1 SV=1
trembl
ID B9R7B8
description Serine/threonine-protein kinase, putative OS=Ricinus communis GN=RCOM_1590280 PE=4 SV=1
Gene Ontology
ID GO:0005829
description serine threonine-protein kinase tricorner

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23912: 157325-163646
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002298_050 0.0 - - serine/threonine-protein kinase, putative [Ricinus communis]
2 Hb_000373_180 0.1121622365 transcription factor TF Family: Trihelix hypothetical protein JCGZ_25182 [Jatropha curcas]
3 Hb_005841_050 0.1128785353 - - PREDICTED: F-box protein SKIP1-like [Jatropha curcas]
4 Hb_000264_020 0.1133019801 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]
5 Hb_003326_020 0.1174391616 - - PREDICTED: replication protein A 32 kDa subunit B [Jatropha curcas]
6 Hb_146225_010 0.1184492391 - - mitochondrial inner membrane protease subunit, putative [Ricinus communis]
7 Hb_002053_060 0.1209797175 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 1 [Jatropha curcas]
8 Hb_019654_090 0.1240209644 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33680 [Jatropha curcas]
9 Hb_000258_170 0.1254748684 - - PREDICTED: uncharacterized protein LOC105630437 [Jatropha curcas]
10 Hb_138585_060 0.1271128466 - - PREDICTED: uncharacterized protein LOC105648743 [Jatropha curcas]
11 Hb_001052_030 0.1320890859 - - PREDICTED: protein TIC 20-IV, chloroplastic [Jatropha curcas]
12 Hb_016604_020 0.1322679712 - - -
13 Hb_034406_020 0.1330132917 - - PREDICTED: jmjC domain-containing protein 7 [Jatropha curcas]
14 Hb_000035_440 0.1333332597 - - -
15 Hb_003044_090 0.134101579 - - PREDICTED: fruit protein pKIWI502 [Jatropha curcas]
16 Hb_000282_070 0.1367669902 - - PREDICTED: protein REVERSION-TO-ETHYLENE SENSITIVITY1 [Jatropha curcas]
17 Hb_003579_030 0.138218189 - - phosphatase 2C family protein [Populus trichocarpa]
18 Hb_001638_020 0.1384998558 - - PREDICTED: protein OSB1, mitochondrial isoform X1 [Jatropha curcas]
19 Hb_001157_010 0.1394796974 - - deoxyhypusine synthase, putative [Ricinus communis]
20 Hb_002999_050 0.1404344861 - - 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_002298_050 Hb_002298_050 Hb_000373_180 Hb_000373_180 Hb_002298_050--Hb_000373_180 Hb_005841_050 Hb_005841_050 Hb_002298_050--Hb_005841_050 Hb_000264_020 Hb_000264_020 Hb_002298_050--Hb_000264_020 Hb_003326_020 Hb_003326_020 Hb_002298_050--Hb_003326_020 Hb_146225_010 Hb_146225_010 Hb_002298_050--Hb_146225_010 Hb_002053_060 Hb_002053_060 Hb_002298_050--Hb_002053_060 Hb_000373_180--Hb_000264_020 Hb_000373_180--Hb_146225_010 Hb_001894_170 Hb_001894_170 Hb_000373_180--Hb_001894_170 Hb_012053_050 Hb_012053_050 Hb_000373_180--Hb_012053_050 Hb_000373_180--Hb_003326_020 Hb_002217_450 Hb_002217_450 Hb_005841_050--Hb_002217_450 Hb_005841_050--Hb_146225_010 Hb_001638_020 Hb_001638_020 Hb_005841_050--Hb_001638_020 Hb_001141_030 Hb_001141_030 Hb_005841_050--Hb_001141_030 Hb_017862_010 Hb_017862_010 Hb_005841_050--Hb_017862_010 Hb_021409_090 Hb_021409_090 Hb_005841_050--Hb_021409_090 Hb_000264_020--Hb_146225_010 Hb_000260_310 Hb_000260_310 Hb_000264_020--Hb_000260_310 Hb_000264_020--Hb_005841_050 Hb_001846_070 Hb_001846_070 Hb_000264_020--Hb_001846_070 Hb_002759_240 Hb_002759_240 Hb_000264_020--Hb_002759_240 Hb_003185_050 Hb_003185_050 Hb_003326_020--Hb_003185_050 Hb_001157_010 Hb_001157_010 Hb_003326_020--Hb_001157_010 Hb_000567_410 Hb_000567_410 Hb_003326_020--Hb_000567_410 Hb_001076_020 Hb_001076_020 Hb_003326_020--Hb_001076_020 Hb_000193_120 Hb_000193_120 Hb_003326_020--Hb_000193_120 Hb_000239_030 Hb_000239_030 Hb_003326_020--Hb_000239_030 Hb_001052_030 Hb_001052_030 Hb_146225_010--Hb_001052_030 Hb_146225_010--Hb_003326_020 Hb_000123_160 Hb_000123_160 Hb_146225_010--Hb_000123_160 Hb_146225_010--Hb_000239_030 Hb_016604_020 Hb_016604_020 Hb_002053_060--Hb_016604_020 Hb_002759_230 Hb_002759_230 Hb_002053_060--Hb_002759_230 Hb_003106_050 Hb_003106_050 Hb_002053_060--Hb_003106_050 Hb_000099_060 Hb_000099_060 Hb_002053_060--Hb_000099_060 Hb_002909_060 Hb_002909_060 Hb_002053_060--Hb_002909_060 Hb_002182_060 Hb_002182_060 Hb_002053_060--Hb_002182_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.5133 17.0999 9.35371 17.9302 33.0219 17.3971
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
42.5446 145.076 96.1803 13.1181 10.7749

CAGE analysis