Hb_001894_170

Information

Type -
Description -
Location Contig1894: 147402-153032
Sequence    

Annotation

kegg
ID rcu:RCOM_0528030
description Pantothenate kinase, putative (EC:2.7.1.33)
nr
ID XP_012085397.1
description PREDICTED: pantothenate kinase 1 [Jatropha curcas]
swissprot
ID Q0J035
description Pantothenate kinase 2 OS=Oryza sativa subsp. japonica GN=Os09g0533100 PE=2 SV=2
trembl
ID A0A067JUT0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17756 PE=4 SV=1
Gene Ontology
ID GO:0016301
description pantothenate kinase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18818: 152790-152910
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001894_170 0.0 - - PREDICTED: pantothenate kinase 1 [Jatropha curcas]
2 Hb_002759_240 0.0961015833 - - hypothetical protein EUGRSUZ_E01319 [Eucalyptus grandis]
3 Hb_017434_050 0.1242294076 - - PREDICTED: importin subunit beta-3-like [Jatropha curcas]
4 Hb_000264_020 0.1253316997 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]
5 Hb_000723_190 0.1291303664 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
6 Hb_000373_180 0.130010586 transcription factor TF Family: Trihelix hypothetical protein JCGZ_25182 [Jatropha curcas]
7 Hb_006594_020 0.1343454631 - - PREDICTED: uncharacterized protein LOC105138974 isoform X1 [Populus euphratica]
8 Hb_001846_070 0.1362981725 - - PREDICTED: fructokinase-1 [Jatropha curcas]
9 Hb_146225_010 0.1516367777 - - mitochondrial inner membrane protease subunit, putative [Ricinus communis]
10 Hb_029510_040 0.1527778328 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Vitis vinifera]
11 Hb_003642_050 0.157067844 - - hypothetical protein CISIN_1g048193mg, partial [Citrus sinensis]
12 Hb_012053_050 0.1615976254 - - PREDICTED: UDP-D-apiose/UDP-D-xylose synthase 2 [Jatropha curcas]
13 Hb_000562_040 0.164698007 - - PREDICTED: auxin response factor 5 isoform X1 [Jatropha curcas]
14 Hb_168501_010 0.1677562261 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein, putative [Ricinus communis]
15 Hb_019654_090 0.1700704464 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33680 [Jatropha curcas]
16 Hb_001776_170 0.1704603638 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001369_450 0.1708143027 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
18 Hb_000432_050 0.1736346243 - - GTP-binding protein typa/bipa, putative [Ricinus communis]
19 Hb_005614_050 0.17545369 - - PREDICTED: aspartate aminotransferase, mitochondrial-like [Jatropha curcas]
20 Hb_001052_030 0.1755880274 - - PREDICTED: protein TIC 20-IV, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001894_170 Hb_001894_170 Hb_002759_240 Hb_002759_240 Hb_001894_170--Hb_002759_240 Hb_017434_050 Hb_017434_050 Hb_001894_170--Hb_017434_050 Hb_000264_020 Hb_000264_020 Hb_001894_170--Hb_000264_020 Hb_000723_190 Hb_000723_190 Hb_001894_170--Hb_000723_190 Hb_000373_180 Hb_000373_180 Hb_001894_170--Hb_000373_180 Hb_006594_020 Hb_006594_020 Hb_001894_170--Hb_006594_020 Hb_001846_070 Hb_001846_070 Hb_002759_240--Hb_001846_070 Hb_002759_240--Hb_000264_020 Hb_146225_010 Hb_146225_010 Hb_002759_240--Hb_146225_010 Hb_005841_040 Hb_005841_040 Hb_002759_240--Hb_005841_040 Hb_001052_030 Hb_001052_030 Hb_002759_240--Hb_001052_030 Hb_017434_050--Hb_006594_020 Hb_017434_050--Hb_000373_180 Hb_017434_050--Hb_000723_190 Hb_004414_050 Hb_004414_050 Hb_017434_050--Hb_004414_050 Hb_009314_010 Hb_009314_010 Hb_017434_050--Hb_009314_010 Hb_000264_020--Hb_000373_180 Hb_000264_020--Hb_146225_010 Hb_000260_310 Hb_000260_310 Hb_000264_020--Hb_000260_310 Hb_005841_050 Hb_005841_050 Hb_000264_020--Hb_005841_050 Hb_000264_020--Hb_001846_070 Hb_000723_190--Hb_002759_240 Hb_002182_090 Hb_002182_090 Hb_000723_190--Hb_002182_090 Hb_005539_240 Hb_005539_240 Hb_000723_190--Hb_005539_240 Hb_000252_130 Hb_000252_130 Hb_000723_190--Hb_000252_130 Hb_000432_050 Hb_000432_050 Hb_000723_190--Hb_000432_050 Hb_002298_050 Hb_002298_050 Hb_000373_180--Hb_002298_050 Hb_000373_180--Hb_146225_010 Hb_012053_050 Hb_012053_050 Hb_000373_180--Hb_012053_050 Hb_003326_020 Hb_003326_020 Hb_000373_180--Hb_003326_020 Hb_005614_050 Hb_005614_050 Hb_006594_020--Hb_005614_050 Hb_007161_010 Hb_007161_010 Hb_006594_020--Hb_007161_010 Hb_001232_130 Hb_001232_130 Hb_006594_020--Hb_001232_130 Hb_000380_020 Hb_000380_020 Hb_006594_020--Hb_000380_020 Hb_019654_090 Hb_019654_090 Hb_006594_020--Hb_019654_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.53346 1.98942 1.66779 3.0134 2.68309 4.28014
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.6891 37.0647 41.732 7.84319 2.99748

CAGE analysis