Hb_002182_090

Information

Type transcription factor
Description TF Family: C2C2-Dof
Location Contig2182: 95904-97889
Sequence    

Annotation

kegg
ID tcc:TCM_015456
description F-box family protein, putative isoform 1
nr
ID XP_012474644.1
description PREDICTED: dof zinc finger protein DOF4.6-like isoform X1 [Gossypium raimondii]
swissprot
ID Q43385
description Dof zinc finger protein DOF3.7 OS=Arabidopsis thaliana GN=DOF3.7 PE=1 SV=2
trembl
ID A0A0D2R3F6
description Gossypium raimondii chromosome 4, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_004G122800 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dof zinc finger isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22502: 95895-97807
cDNA
(Sanger)
(ID:Location)		 037_B08.ab1: 96432-97250

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002182_090 0.0 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF4.6-like isoform X1 [Gossypium raimondii]
2 Hb_001279_130 0.120599307 - - hypothetical protein L484_017676 [Morus notabilis]
3 Hb_001268_080 0.1303815937 - - catalytic, putative [Ricinus communis]
4 Hb_072912_020 0.1362906284 - - abhydrolase domain containing, putative [Ricinus communis]
5 Hb_000723_190 0.1401889209 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
6 Hb_002603_150 0.1424521191 - - PREDICTED: protein yippee-like [Jatropha curcas]
7 Hb_000215_180 0.1437335918 - - hypothetical protein 17 [Hevea brasiliensis]
8 Hb_029243_040 0.1449676171 - - PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial-like [Populus euphratica]
9 Hb_006594_020 0.1468719278 - - PREDICTED: uncharacterized protein LOC105138974 isoform X1 [Populus euphratica]
10 Hb_002759_240 0.1471643157 - - hypothetical protein EUGRSUZ_E01319 [Eucalyptus grandis]
11 Hb_001545_060 0.147392117 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
12 Hb_001507_070 0.1489581524 - - conserved hypothetical protein [Ricinus communis]
13 Hb_078633_010 0.1493904571 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
14 Hb_003043_120 0.152565868 - - conserved hypothetical protein [Ricinus communis]
15 Hb_006831_030 0.1536109216 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
16 Hb_017862_010 0.1540403769 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
17 Hb_005539_240 0.1542191517 - - hypothetical protein MIMGU_mgv1a0220462mg, partial [Erythranthe guttata]
18 Hb_000896_120 0.1542555541 - - PREDICTED: acyl-protein thioesterase 2-like [Populus euphratica]
19 Hb_001006_180 0.1547143057 - - PREDICTED: endonuclease V-like [Jatropha curcas]
20 Hb_011004_010 0.1556085693 - - Mitochondrial carnitine/acylcarnitine carrier protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002182_090 Hb_002182_090 Hb_001279_130 Hb_001279_130 Hb_002182_090--Hb_001279_130 Hb_001268_080 Hb_001268_080 Hb_002182_090--Hb_001268_080 Hb_072912_020 Hb_072912_020 Hb_002182_090--Hb_072912_020 Hb_000723_190 Hb_000723_190 Hb_002182_090--Hb_000723_190 Hb_002603_150 Hb_002603_150 Hb_002182_090--Hb_002603_150 Hb_000215_180 Hb_000215_180 Hb_002182_090--Hb_000215_180 Hb_000380_020 Hb_000380_020 Hb_001279_130--Hb_000380_020 Hb_029243_040 Hb_029243_040 Hb_001279_130--Hb_029243_040 Hb_010594_030 Hb_010594_030 Hb_001279_130--Hb_010594_030 Hb_001102_250 Hb_001102_250 Hb_001279_130--Hb_001102_250 Hb_006594_020 Hb_006594_020 Hb_001279_130--Hb_006594_020 Hb_000367_280 Hb_000367_280 Hb_001268_080--Hb_000367_280 Hb_001213_120 Hb_001213_120 Hb_001268_080--Hb_001213_120 Hb_078633_010 Hb_078633_010 Hb_001268_080--Hb_078633_010 Hb_011245_020 Hb_011245_020 Hb_001268_080--Hb_011245_020 Hb_006831_030 Hb_006831_030 Hb_001268_080--Hb_006831_030 Hb_004297_040 Hb_004297_040 Hb_001268_080--Hb_004297_040 Hb_000544_110 Hb_000544_110 Hb_072912_020--Hb_000544_110 Hb_005137_020 Hb_005137_020 Hb_072912_020--Hb_005137_020 Hb_072912_020--Hb_001102_250 Hb_072912_020--Hb_078633_010 Hb_072912_020--Hb_004297_040 Hb_072912_020--Hb_001268_080 Hb_001894_170 Hb_001894_170 Hb_000723_190--Hb_001894_170 Hb_002759_240 Hb_002759_240 Hb_000723_190--Hb_002759_240 Hb_005539_240 Hb_005539_240 Hb_000723_190--Hb_005539_240 Hb_000252_130 Hb_000252_130 Hb_000723_190--Hb_000252_130 Hb_000432_050 Hb_000432_050 Hb_000723_190--Hb_000432_050 Hb_017862_010 Hb_017862_010 Hb_002603_150--Hb_017862_010 Hb_000069_100 Hb_000069_100 Hb_002603_150--Hb_000069_100 Hb_000012_100 Hb_000012_100 Hb_002603_150--Hb_000012_100 Hb_000069_550 Hb_000069_550 Hb_002603_150--Hb_000069_550 Hb_003053_030 Hb_003053_030 Hb_002603_150--Hb_003053_030 Hb_001687_040 Hb_001687_040 Hb_002603_150--Hb_001687_040 Hb_183086_040 Hb_183086_040 Hb_000215_180--Hb_183086_040 Hb_000922_100 Hb_000922_100 Hb_000215_180--Hb_000922_100 Hb_000780_210 Hb_000780_210 Hb_000215_180--Hb_000780_210 Hb_001377_380 Hb_001377_380 Hb_000215_180--Hb_001377_380 Hb_000896_120 Hb_000896_120 Hb_000215_180--Hb_000896_120 Hb_000106_100 Hb_000106_100 Hb_000215_180--Hb_000106_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.3195 2.23837 1.28917 10.261 8.22064 5.82163
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
58.7208 80.1556 65.5078 16.6614 6.33614

CAGE analysis