Hb_072912_020

Information

Type -
Description -
Location Contig72912: 2242-4578
Sequence    

Annotation

kegg
ID rcu:RCOM_0652440
description abhydrolase domain containing, putative
nr
ID XP_002521325.1
description abhydrolase domain containing, putative [Ricinus communis]
swissprot
ID Q8R2Y0
description Monoacylglycerol lipase ABHD6 OS=Mus musculus GN=Abhd6 PE=1 SV=1
trembl
ID B9S5Q6
description Abhydrolase domain containing, putative OS=Ricinus communis GN=RCOM_0652440 PE=4 SV=1
Gene Ontology
ID GO:0003824
description abhydrolase domain

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55900: 2242-4575
cDNA
(Sanger)
(ID:Location)		 011_G06.ab1: 3513-4573

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_072912_020 0.0 - - abhydrolase domain containing, putative [Ricinus communis]
2 Hb_000544_110 0.0693488272 - - PREDICTED: probable calcium-binding protein CML27 [Jatropha curcas]
3 Hb_005137_020 0.0765867744 - - PREDICTED: uncharacterized protein LOC101759641 [Setaria italica]
4 Hb_001102_250 0.0819405644 - - PREDICTED: E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X1 [Jatropha curcas]
5 Hb_078633_010 0.0865536797 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
6 Hb_004297_040 0.1096480041 - - acyl CoA reductase [Hevea brasiliensis]
7 Hb_001268_080 0.1108957412 - - catalytic, putative [Ricinus communis]
8 Hb_008066_040 0.11531192 transcription factor TF Family: M-type PREDICTED: agamous-like MADS-box protein AGL62 [Jatropha curcas]
9 Hb_003095_070 0.1202447256 - - hypothetical protein POPTR_0009s11230g [Populus trichocarpa]
10 Hb_089100_030 0.1245510939 - - -
11 Hb_003211_050 0.125184648 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
12 Hb_000367_280 0.1286825207 - - PREDICTED: flavin-containing monooxygenase FMO GS-OX-like 9 [Jatropha curcas]
13 Hb_005908_040 0.1303394635 - - hypothetical protein POPTR_0017s06850g [Populus trichocarpa]
14 Hb_005841_040 0.13149963 - - stress-induced hydrophobic peptide 1 [Hevea brasiliensis]
15 Hb_002045_230 0.1322006794 - - Ammonium transporter 2 [Theobroma cacao]
16 Hb_001213_120 0.1333554635 - - PREDICTED: immediate early response 3-interacting protein 1-like [Brassica rapa]
17 Hb_002182_090 0.1362906284 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF4.6-like isoform X1 [Gossypium raimondii]
18 Hb_011671_400 0.1378161414 - - PREDICTED: cyclin-U4-1 [Jatropha curcas]
19 Hb_000215_180 0.1407386825 - - hypothetical protein 17 [Hevea brasiliensis]
20 Hb_011245_020 0.1413026379 - - Ferrochelatase [Medicago truncatula]

Gene co-expression network

sample Hb_072912_020 Hb_072912_020 Hb_000544_110 Hb_000544_110 Hb_072912_020--Hb_000544_110 Hb_005137_020 Hb_005137_020 Hb_072912_020--Hb_005137_020 Hb_001102_250 Hb_001102_250 Hb_072912_020--Hb_001102_250 Hb_078633_010 Hb_078633_010 Hb_072912_020--Hb_078633_010 Hb_004297_040 Hb_004297_040 Hb_072912_020--Hb_004297_040 Hb_001268_080 Hb_001268_080 Hb_072912_020--Hb_001268_080 Hb_000544_110--Hb_005137_020 Hb_000544_110--Hb_001102_250 Hb_000544_110--Hb_078633_010 Hb_008066_040 Hb_008066_040 Hb_000544_110--Hb_008066_040 Hb_005908_040 Hb_005908_040 Hb_000544_110--Hb_005908_040 Hb_005137_020--Hb_078633_010 Hb_005137_020--Hb_005908_040 Hb_005137_020--Hb_001102_250 Hb_005137_020--Hb_004297_040 Hb_003095_070 Hb_003095_070 Hb_001102_250--Hb_003095_070 Hb_005841_040 Hb_005841_040 Hb_001102_250--Hb_005841_040 Hb_001102_250--Hb_004297_040 Hb_078633_010--Hb_001268_080 Hb_001213_120 Hb_001213_120 Hb_078633_010--Hb_001213_120 Hb_000367_280 Hb_000367_280 Hb_078633_010--Hb_000367_280 Hb_004297_040--Hb_000367_280 Hb_004297_040--Hb_001213_120 Hb_004297_040--Hb_078633_010 Hb_004297_040--Hb_001268_080 Hb_001268_080--Hb_000367_280 Hb_001268_080--Hb_001213_120 Hb_011245_020 Hb_011245_020 Hb_001268_080--Hb_011245_020 Hb_006831_030 Hb_006831_030 Hb_001268_080--Hb_006831_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.6119 1.06098 1.22056 12.033 11.812 14.3382
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
81.7184 136.143 70.4508 11.907 1.01777

CAGE analysis