Hb_011245_020

Information

Type -
Description -
Location Contig11245: 34116-47960
Sequence    

Annotation

kegg
ID rcu:RCOM_1768240
description ferrochelatase, putative (EC:4.99.1.1)
nr
ID XP_003603136.1
description Ferrochelatase [Medicago truncatula]
swissprot
ID A2Y3Q5
description Ferrochelatase-2, chloroplastic OS=Oryza sativa subsp. indica GN=HEMH PE=2 SV=2
trembl
ID B9RHR3
description Ferrochelatase OS=Ricinus communis GN=RCOM_1768240 PE=3 SV=1
Gene Ontology
ID GO:0004325
description ferrochelatase- chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03835: 34097-47920 , PASA_asmbl_03836: 34097-46381 , PASA_asmbl_03837: 47240-47475
cDNA
(Sanger)
(ID:Location)		 020_K16.ab1: 34192-35702 , 041_I02.ab1: 34192-35492

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011245_020 0.0 - - Ferrochelatase [Medicago truncatula]
2 Hb_003043_120 0.0707175938 - - conserved hypothetical protein [Ricinus communis]
3 Hb_006831_030 0.0724855989 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
4 Hb_000367_280 0.0755869827 - - PREDICTED: flavin-containing monooxygenase FMO GS-OX-like 9 [Jatropha curcas]
5 Hb_001268_080 0.0802423037 - - catalytic, putative [Ricinus communis]
6 Hb_007810_030 0.0982589651 - - PREDICTED: uncharacterized protein LOC105647693 [Jatropha curcas]
7 Hb_017862_010 0.0986342345 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
8 Hb_001935_030 0.1018557927 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000069_100 0.1056077847 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003929_120 0.1068617017 - - PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Jatropha curcas]
11 Hb_001102_250 0.1090178111 - - PREDICTED: E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X1 [Jatropha curcas]
12 Hb_001213_120 0.1094298293 - - PREDICTED: immediate early response 3-interacting protein 1-like [Brassica rapa]
13 Hb_005841_040 0.1098632407 - - stress-induced hydrophobic peptide 1 [Hevea brasiliensis]
14 Hb_000567_170 0.1102335355 - - PREDICTED: putative lipase YDR444W isoform X1 [Jatropha curcas]
15 Hb_034585_050 0.1102742241 - - -
16 Hb_005841_050 0.1135975054 - - PREDICTED: F-box protein SKIP1-like [Jatropha curcas]
17 Hb_000352_140 0.1150039407 - - -
18 Hb_002045_230 0.1195980801 - - Ammonium transporter 2 [Theobroma cacao]
19 Hb_004297_040 0.1225721437 - - acyl CoA reductase [Hevea brasiliensis]
20 Hb_008066_040 0.1240752527 transcription factor TF Family: M-type PREDICTED: agamous-like MADS-box protein AGL62 [Jatropha curcas]

Gene co-expression network

sample Hb_011245_020 Hb_011245_020 Hb_003043_120 Hb_003043_120 Hb_011245_020--Hb_003043_120 Hb_006831_030 Hb_006831_030 Hb_011245_020--Hb_006831_030 Hb_000367_280 Hb_000367_280 Hb_011245_020--Hb_000367_280 Hb_001268_080 Hb_001268_080 Hb_011245_020--Hb_001268_080 Hb_007810_030 Hb_007810_030 Hb_011245_020--Hb_007810_030 Hb_017862_010 Hb_017862_010 Hb_011245_020--Hb_017862_010 Hb_003043_120--Hb_017862_010 Hb_001102_250 Hb_001102_250 Hb_003043_120--Hb_001102_250 Hb_003043_120--Hb_006831_030 Hb_034585_050 Hb_034585_050 Hb_003043_120--Hb_034585_050 Hb_000069_100 Hb_000069_100 Hb_003043_120--Hb_000069_100 Hb_006831_030--Hb_000069_100 Hb_000398_160 Hb_000398_160 Hb_006831_030--Hb_000398_160 Hb_001935_030 Hb_001935_030 Hb_006831_030--Hb_001935_030 Hb_006831_030--Hb_001268_080 Hb_001006_180 Hb_001006_180 Hb_006831_030--Hb_001006_180 Hb_000367_280--Hb_001268_080 Hb_001213_120 Hb_001213_120 Hb_000367_280--Hb_001213_120 Hb_000367_280--Hb_007810_030 Hb_004297_040 Hb_004297_040 Hb_000367_280--Hb_004297_040 Hb_078633_010 Hb_078633_010 Hb_000367_280--Hb_078633_010 Hb_001268_080--Hb_001213_120 Hb_001268_080--Hb_078633_010 Hb_001268_080--Hb_004297_040 Hb_015934_020 Hb_015934_020 Hb_007810_030--Hb_015934_020 Hb_000078_010 Hb_000078_010 Hb_007810_030--Hb_000078_010 Hb_007810_030--Hb_001213_120 Hb_000032_220 Hb_000032_220 Hb_007810_030--Hb_000032_220 Hb_002603_150 Hb_002603_150 Hb_017862_010--Hb_002603_150 Hb_017862_010--Hb_000069_100 Hb_001123_120 Hb_001123_120 Hb_017862_010--Hb_001123_120 Hb_000212_260 Hb_000212_260 Hb_017862_010--Hb_000212_260 Hb_017862_010--Hb_006831_030 Hb_000224_090 Hb_000224_090 Hb_017862_010--Hb_000224_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.142 2.62111 5.05029 7.03159 16.1657 28.9492
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
70.324 108.679 82.3478 8.72141 6.55043

CAGE analysis