Hb_001369_600

Information

Type -
Description -
Location Contig1369: 473744-481695
Sequence    

Annotation

kegg
ID rcu:RCOM_1499970
description kinase, putative (EC:2.7.11.13)
nr
ID XP_002510928.1
description kinase, putative [Ricinus communis]
swissprot
ID Q9LE81
description Probable serine/threonine protein kinase IRE OS=Arabidopsis thaliana GN=IRE PE=2 SV=1
trembl
ID B9R9Q3
description Kinase, putative OS=Ricinus communis GN=RCOM_1499970 PE=4 SV=1
Gene Ontology
ID GO:0004697
description probable serine threonine protein kinase ire

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10204: 475089-476798 , PASA_asmbl_10205: 476958-478136 , PASA_asmbl_10206: 480287-481006
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001369_600 0.0 - - kinase, putative [Ricinus communis]
2 Hb_002067_140 0.1119245537 - - -
3 Hb_012053_050 0.1206114848 - - PREDICTED: UDP-D-apiose/UDP-D-xylose synthase 2 [Jatropha curcas]
4 Hb_001776_170 0.1235186399 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001488_370 0.1439966988 - - Esterase PIR7B, putative [Ricinus communis]
6 Hb_007426_050 0.163598033 transcription factor TF Family: Tify JAZ8 [Hevea brasiliensis]
7 Hb_000589_160 0.1671532574 - - PREDICTED: expansin-A4 [Jatropha curcas]
8 Hb_000979_250 0.167814054 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001141_110 0.1756979447 - - hypothetical protein JCGZ_02206 [Jatropha curcas]
10 Hb_012053_010 0.1828222739 - - srpk, putative [Ricinus communis]
11 Hb_012053_040 0.183290122 - - PREDICTED: putative phospholipid:diacylglycerol acyltransferase 2 [Jatropha curcas]
12 Hb_002105_030 0.1893276528 - - -
13 Hb_001369_450 0.1900904773 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
14 Hb_007254_080 0.1902774174 - - -
15 Hb_002759_240 0.1956414713 - - hypothetical protein EUGRSUZ_E01319 [Eucalyptus grandis]
16 Hb_027337_120 0.1979218723 - - PREDICTED: uncharacterized protein LOC104430249 [Eucalyptus grandis]
17 Hb_000045_210 0.1979968921 - - -
18 Hb_012545_050 0.1985855088 - - PREDICTED: serine carboxypeptidase II-3-like [Jatropha curcas]
19 Hb_001511_140 0.2029246354 - - PREDICTED: RING-H2 finger protein ATL66 [Jatropha curcas]
20 Hb_000270_620 0.2032530447 - - PREDICTED: succinate dehydrogenase subunit 7B, mitochondrial-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001369_600 Hb_001369_600 Hb_002067_140 Hb_002067_140 Hb_001369_600--Hb_002067_140 Hb_012053_050 Hb_012053_050 Hb_001369_600--Hb_012053_050 Hb_001776_170 Hb_001776_170 Hb_001369_600--Hb_001776_170 Hb_001488_370 Hb_001488_370 Hb_001369_600--Hb_001488_370 Hb_007426_050 Hb_007426_050 Hb_001369_600--Hb_007426_050 Hb_000589_160 Hb_000589_160 Hb_001369_600--Hb_000589_160 Hb_002067_140--Hb_001776_170 Hb_002067_140--Hb_012053_050 Hb_001369_450 Hb_001369_450 Hb_002067_140--Hb_001369_450 Hb_002067_140--Hb_001488_370 Hb_000094_110 Hb_000094_110 Hb_002067_140--Hb_000094_110 Hb_012053_050--Hb_001776_170 Hb_012053_050--Hb_000589_160 Hb_000373_180 Hb_000373_180 Hb_012053_050--Hb_000373_180 Hb_002759_240 Hb_002759_240 Hb_012053_050--Hb_002759_240 Hb_012053_050--Hb_001488_370 Hb_001511_140 Hb_001511_140 Hb_001776_170--Hb_001511_140 Hb_001776_170--Hb_002759_240 Hb_000979_250 Hb_000979_250 Hb_001776_170--Hb_000979_250 Hb_012545_050 Hb_012545_050 Hb_001488_370--Hb_012545_050 Hb_000997_190 Hb_000997_190 Hb_001488_370--Hb_000997_190 Hb_001437_130 Hb_001437_130 Hb_001488_370--Hb_001437_130 Hb_001488_370--Hb_001776_170 Hb_012053_040 Hb_012053_040 Hb_007426_050--Hb_012053_040 Hb_000563_260 Hb_000563_260 Hb_007426_050--Hb_000563_260 Hb_001348_230 Hb_001348_230 Hb_007426_050--Hb_001348_230 Hb_029879_090 Hb_029879_090 Hb_007426_050--Hb_029879_090 Hb_141194_010 Hb_141194_010 Hb_007426_050--Hb_141194_010 Hb_012053_010 Hb_012053_010 Hb_000589_160--Hb_012053_010 Hb_004100_090 Hb_004100_090 Hb_000589_160--Hb_004100_090 Hb_002105_030 Hb_002105_030 Hb_000589_160--Hb_002105_030 Hb_027337_120 Hb_027337_120 Hb_000589_160--Hb_027337_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.419547 0.239302 0.533136 0.411313 0.0557497 0.0417063
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.08268 5.56157 3.46655 0.664073 0.140271

CAGE analysis