Hb_004100_090

Information

Type -
Description -
Location Contig4100: 74410-76630
Sequence    

Annotation

kegg
ID cit:102614190
description profilin-3-like
nr
ID Q9LEI8.1
description RecName: Full=Profilin-6; AltName: Full=Pollen allergen Hev b 8.0204; AltName: Allergen=Hev b 8.0204 [Hevea brasiliensis]
swissprot
ID Q9LEI8
description Profilin-6 OS=Hevea brasiliensis PE=1 SV=1
trembl
ID A0A067L9R6
description Profilin OS=Jatropha curcas GN=JCGZ_24848 PE=3 SV=1
Gene Ontology
ID GO:0003779
description profilin 3 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40521: 74408-76709
cDNA
(Sanger)
(ID:Location)		 011_L11.ab1: 74407-76621 , 012_H07.ab1: 74407-76619 , 024_M04.ab1: 74408-76535 , 026_C10.ab1: 74407-76504 , 026_K14.ab1: 76396-76664 , 027_M10.ab1: 74407-76239 , 030_G12.ab1: 74408-76556 , 032_N19.ab1: 74408-76509 , 036_H13.ab1: 74408-76617 , 042_J23.ab1: 74411-76598 , 045_H15.ab1: 74408-76579 , 048_G11.ab1: 74408-76635

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004100_090 0.0 - - RecName: Full=Profilin-6; AltName: Full=Pollen allergen Hev b 8.0204; AltName: Allergen=Hev b 8.0204 [Hevea brasiliensis]
2 Hb_005321_010 0.1380429919 - - PREDICTED: uncharacterized protein LOC105644542 [Jatropha curcas]
3 Hb_000483_090 0.1527177886 - - -
4 Hb_012053_010 0.1529771658 - - srpk, putative [Ricinus communis]
5 Hb_003540_200 0.160446682 - - PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Jatropha curcas]
6 Hb_000589_160 0.164278015 - - PREDICTED: expansin-A4 [Jatropha curcas]
7 Hb_027892_040 0.1710184067 - - PREDICTED: proteasome subunit alpha type-6 [Jatropha curcas]
8 Hb_001266_030 0.1796582561 - - PREDICTED: lipid phosphate phosphatase epsilon 2, chloroplastic-like [Jatropha curcas]
9 Hb_138455_010 0.1832324211 - - UDP-glucosyltransferase, putative [Ricinus communis]
10 Hb_000045_210 0.1837550122 - - -
11 Hb_000110_170 0.1886708556 - - PREDICTED: arginine biosynthesis bifunctional protein ArgJ, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_000291_270 0.1920928273 - - hypothetical protein JCGZ_12006 [Jatropha curcas]
13 Hb_000033_040 0.1930266687 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002344_070 0.1945570755 - - PREDICTED: proteasome subunit alpha type-6 [Jatropha curcas]
15 Hb_003007_010 0.1969454737 - - PREDICTED: probable peptide/nitrate transporter At3g43790 isoform X1 [Populus euphratica]
16 Hb_044653_060 0.1973968135 - - PREDICTED: uncharacterized protein LOC105628750 [Jatropha curcas]
17 Hb_000816_230 0.2051244254 - - PREDICTED: adenine/guanine permease AZG1 [Jatropha curcas]
18 Hb_025645_030 0.2054630659 - - -
19 Hb_002105_030 0.2059576908 - - -
20 Hb_012053_050 0.2063824074 - - PREDICTED: UDP-D-apiose/UDP-D-xylose synthase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_004100_090 Hb_004100_090 Hb_005321_010 Hb_005321_010 Hb_004100_090--Hb_005321_010 Hb_000483_090 Hb_000483_090 Hb_004100_090--Hb_000483_090 Hb_012053_010 Hb_012053_010 Hb_004100_090--Hb_012053_010 Hb_003540_200 Hb_003540_200 Hb_004100_090--Hb_003540_200 Hb_000589_160 Hb_000589_160 Hb_004100_090--Hb_000589_160 Hb_027892_040 Hb_027892_040 Hb_004100_090--Hb_027892_040 Hb_000002_260 Hb_000002_260 Hb_005321_010--Hb_000002_260 Hb_005321_010--Hb_012053_010 Hb_005321_010--Hb_003540_200 Hb_002217_460 Hb_002217_460 Hb_005321_010--Hb_002217_460 Hb_001164_030 Hb_001164_030 Hb_005321_010--Hb_001164_030 Hb_000291_270 Hb_000291_270 Hb_000483_090--Hb_000291_270 Hb_003007_010 Hb_003007_010 Hb_000483_090--Hb_003007_010 Hb_000483_090--Hb_003540_200 Hb_020805_060 Hb_020805_060 Hb_000483_090--Hb_020805_060 Hb_000483_090--Hb_001164_030 Hb_002105_030 Hb_002105_030 Hb_012053_010--Hb_002105_030 Hb_002344_070 Hb_002344_070 Hb_012053_010--Hb_002344_070 Hb_000878_020 Hb_000878_020 Hb_012053_010--Hb_000878_020 Hb_012053_010--Hb_003540_200 Hb_001266_030 Hb_001266_030 Hb_012053_010--Hb_001266_030 Hb_000110_170 Hb_000110_170 Hb_012053_010--Hb_000110_170 Hb_003540_200--Hb_000110_170 Hb_003020_330 Hb_003020_330 Hb_003540_200--Hb_003020_330 Hb_001225_010 Hb_001225_010 Hb_003540_200--Hb_001225_010 Hb_003540_200--Hb_000291_270 Hb_154141_030 Hb_154141_030 Hb_003540_200--Hb_154141_030 Hb_012053_050 Hb_012053_050 Hb_000589_160--Hb_012053_050 Hb_000589_160--Hb_012053_010 Hb_001369_600 Hb_001369_600 Hb_000589_160--Hb_001369_600 Hb_000589_160--Hb_002105_030 Hb_027337_120 Hb_027337_120 Hb_000589_160--Hb_027337_120 Hb_000045_210 Hb_000045_210 Hb_027892_040--Hb_000045_210 Hb_027892_040--Hb_012053_010 Hb_027892_040--Hb_001266_030 Hb_044653_060 Hb_044653_060 Hb_027892_040--Hb_044653_060 Hb_000431_160 Hb_000431_160 Hb_027892_040--Hb_000431_160 Hb_000316_100 Hb_000316_100 Hb_027892_040--Hb_000316_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
224.467 81.6091 171.438 706.503 50.051 90.8338
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
653.334 3905.04 1072.68 101.489 57.2907

CAGE analysis