Hb_000483_090

Information

Type -
Description -
Location Contig483: 67824-81511
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44804: 67721-68854
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000483_090 0.0 - - -
2 Hb_000291_270 0.1356221358 - - hypothetical protein JCGZ_12006 [Jatropha curcas]
3 Hb_004100_090 0.1527177886 - - RecName: Full=Profilin-6; AltName: Full=Pollen allergen Hev b 8.0204; AltName: Allergen=Hev b 8.0204 [Hevea brasiliensis]
4 Hb_003007_010 0.157454018 - - PREDICTED: probable peptide/nitrate transporter At3g43790 isoform X1 [Populus euphratica]
5 Hb_003540_200 0.1753897595 - - PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Jatropha curcas]
6 Hb_020805_060 0.1776685726 - - PREDICTED: protein S-acyltransferase 21 [Jatropha curcas]
7 Hb_001164_030 0.177892021 - - GMP synthase [glutamine-hydrolyzing] subunit A, putative [Ricinus communis]
8 Hb_001016_080 0.1802101005 - - hypothetical protein EUGRSUZ_J02452 [Eucalyptus grandis]
9 Hb_116420_020 0.1827092012 - - Phytosulfokines 3 precursor family protein [Populus trichocarpa]
10 Hb_000768_140 0.1900879599 transcription factor TF Family: SWI/SNF-BAF60b tRNA (guanine-n(7)-)-methyltransferase, putative [Ricinus communis]
11 Hb_008215_030 0.2019909999 - - hypothetical protein 3 [Hevea brasiliensis]
12 Hb_000167_030 0.2027435472 - - PREDICTED: uncharacterized protein LOC105641111 isoform X1 [Jatropha curcas]
13 Hb_009778_040 0.2038118862 - - PREDICTED: uncharacterized protein LOC105110611 [Populus euphratica]
14 Hb_005321_010 0.2041508284 - - PREDICTED: uncharacterized protein LOC105644542 [Jatropha curcas]
15 Hb_025645_030 0.2069173865 - - -
16 Hb_000072_340 0.2085279253 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002243_060 0.2158611931 - - hypothetical protein POPTR_0022s00750g [Populus trichocarpa]
18 Hb_000110_170 0.2185728224 - - PREDICTED: arginine biosynthesis bifunctional protein ArgJ, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_000011_300 0.2191492698 - - PREDICTED: proteasome subunit alpha type-5 isoform X1 [Gossypium raimondii]
20 Hb_154141_030 0.2199563629 - - PREDICTED: histone H2AX [Populus euphratica]

Gene co-expression network

sample Hb_000483_090 Hb_000483_090 Hb_000291_270 Hb_000291_270 Hb_000483_090--Hb_000291_270 Hb_004100_090 Hb_004100_090 Hb_000483_090--Hb_004100_090 Hb_003007_010 Hb_003007_010 Hb_000483_090--Hb_003007_010 Hb_003540_200 Hb_003540_200 Hb_000483_090--Hb_003540_200 Hb_020805_060 Hb_020805_060 Hb_000483_090--Hb_020805_060 Hb_001164_030 Hb_001164_030 Hb_000483_090--Hb_001164_030 Hb_000291_270--Hb_003540_200 Hb_154141_030 Hb_154141_030 Hb_000291_270--Hb_154141_030 Hb_003020_330 Hb_003020_330 Hb_000291_270--Hb_003020_330 Hb_001016_080 Hb_001016_080 Hb_000291_270--Hb_001016_080 Hb_025645_030 Hb_025645_030 Hb_000291_270--Hb_025645_030 Hb_005321_010 Hb_005321_010 Hb_004100_090--Hb_005321_010 Hb_012053_010 Hb_012053_010 Hb_004100_090--Hb_012053_010 Hb_004100_090--Hb_003540_200 Hb_000589_160 Hb_000589_160 Hb_004100_090--Hb_000589_160 Hb_027892_040 Hb_027892_040 Hb_004100_090--Hb_027892_040 Hb_141194_010 Hb_141194_010 Hb_003007_010--Hb_141194_010 Hb_000045_210 Hb_000045_210 Hb_003007_010--Hb_000045_210 Hb_116420_020 Hb_116420_020 Hb_003007_010--Hb_116420_020 Hb_007254_080 Hb_007254_080 Hb_003007_010--Hb_007254_080 Hb_000592_060 Hb_000592_060 Hb_003007_010--Hb_000592_060 Hb_000110_170 Hb_000110_170 Hb_003540_200--Hb_000110_170 Hb_003540_200--Hb_003020_330 Hb_001225_010 Hb_001225_010 Hb_003540_200--Hb_001225_010 Hb_003540_200--Hb_012053_010 Hb_003540_200--Hb_154141_030 Hb_000768_140 Hb_000768_140 Hb_020805_060--Hb_000768_140 Hb_020805_060--Hb_001164_030 Hb_000011_300 Hb_000011_300 Hb_020805_060--Hb_000011_300 Hb_000189_540 Hb_000189_540 Hb_020805_060--Hb_000189_540 Hb_170426_010 Hb_170426_010 Hb_020805_060--Hb_170426_010 Hb_004787_040 Hb_004787_040 Hb_020805_060--Hb_004787_040 Hb_001164_030--Hb_000768_140 Hb_001164_030--Hb_000291_270 Hb_091889_010 Hb_091889_010 Hb_001164_030--Hb_091889_010 Hb_000120_150 Hb_000120_150 Hb_001164_030--Hb_000120_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.0802 0.689258 4.61957 15.3383 0.13278 0.183144
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.8903 42.9995 12.322 2.39142 1.02021

CAGE analysis