Hb_003007_010

Information

Type -
Description -
Location Contig3007: 3890-5851
Sequence    

Annotation

kegg
ID pop:POPTR_0006s02710g
description POPTRDRAFT_761917; hypothetical protein
nr
ID XP_011040675.1
description PREDICTED: probable peptide/nitrate transporter At3g43790 isoform X1 [Populus euphratica]
swissprot
ID Q94BZ1
description Protein ZINC INDUCED FACILITATOR-LIKE 1 OS=Arabidopsis thaliana GN=ZIFL1 PE=2 SV=1
trembl
ID B9HDH7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s02710g PE=4 SV=2
Gene Ontology
ID GO:0016021
description protein zinc induced facilitator-like 1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003007_010 0.0 - - PREDICTED: probable peptide/nitrate transporter At3g43790 isoform X1 [Populus euphratica]
2 Hb_141194_010 0.144328658 - - PREDICTED: protein ZINC INDUCED FACILITATOR 1-like isoform X2 [Populus euphratica]
3 Hb_000483_090 0.157454018 - - -
4 Hb_000045_210 0.1631196902 - - -
5 Hb_116420_020 0.1724408361 - - Phytosulfokines 3 precursor family protein [Populus trichocarpa]
6 Hb_007254_080 0.1906685623 - - -
7 Hb_000592_060 0.1918284836 - - PREDICTED: ras-related protein RABA6a [Populus euphratica]
8 Hb_002704_050 0.1926579363 - - cysteine-type peptidase, putative [Ricinus communis]
9 Hb_000167_030 0.1937070916 - - PREDICTED: uncharacterized protein LOC105641111 isoform X1 [Jatropha curcas]
10 Hb_004100_090 0.1969454737 - - RecName: Full=Profilin-6; AltName: Full=Pollen allergen Hev b 8.0204; AltName: Allergen=Hev b 8.0204 [Hevea brasiliensis]
11 Hb_044653_060 0.200713063 - - PREDICTED: uncharacterized protein LOC105628750 [Jatropha curcas]
12 Hb_001141_110 0.2024500991 - - hypothetical protein JCGZ_02206 [Jatropha curcas]
13 Hb_025645_030 0.2071027878 - - -
14 Hb_034482_040 0.2094280407 - - aspartate kinase, partial [Francisella tularensis]
15 Hb_029879_090 0.2099834514 - - PREDICTED: serine/threonine-protein kinase At3g07070 [Jatropha curcas]
16 Hb_000431_160 0.2124472783 - - PREDICTED: protein transport protein Sec61 subunit gamma-like [Jatropha curcas]
17 Hb_008066_030 0.2135604007 - - PREDICTED: uncharacterized protein LOC105631333 [Jatropha curcas]
18 Hb_012022_100 0.2136807212 - - CPRD49 family protein [Populus trichocarpa]
19 Hb_003540_200 0.2147693682 - - PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Jatropha curcas]
20 Hb_001433_100 0.2148568077 - - PREDICTED: F-box/LRR-repeat protein 3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003007_010 Hb_003007_010 Hb_141194_010 Hb_141194_010 Hb_003007_010--Hb_141194_010 Hb_000483_090 Hb_000483_090 Hb_003007_010--Hb_000483_090 Hb_000045_210 Hb_000045_210 Hb_003007_010--Hb_000045_210 Hb_116420_020 Hb_116420_020 Hb_003007_010--Hb_116420_020 Hb_007254_080 Hb_007254_080 Hb_003007_010--Hb_007254_080 Hb_000592_060 Hb_000592_060 Hb_003007_010--Hb_000592_060 Hb_141194_010--Hb_000045_210 Hb_034482_040 Hb_034482_040 Hb_141194_010--Hb_034482_040 Hb_003226_240 Hb_003226_240 Hb_141194_010--Hb_003226_240 Hb_001143_070 Hb_001143_070 Hb_141194_010--Hb_001143_070 Hb_141194_010--Hb_000592_060 Hb_000291_270 Hb_000291_270 Hb_000483_090--Hb_000291_270 Hb_004100_090 Hb_004100_090 Hb_000483_090--Hb_004100_090 Hb_003540_200 Hb_003540_200 Hb_000483_090--Hb_003540_200 Hb_020805_060 Hb_020805_060 Hb_000483_090--Hb_020805_060 Hb_001164_030 Hb_001164_030 Hb_000483_090--Hb_001164_030 Hb_044653_060 Hb_044653_060 Hb_000045_210--Hb_044653_060 Hb_027892_040 Hb_027892_040 Hb_000045_210--Hb_027892_040 Hb_001266_030 Hb_001266_030 Hb_000045_210--Hb_001266_030 Hb_012053_010 Hb_012053_010 Hb_000045_210--Hb_012053_010 Hb_000431_160 Hb_000431_160 Hb_000045_210--Hb_000431_160 Hb_009778_040 Hb_009778_040 Hb_116420_020--Hb_009778_040 Hb_000167_030 Hb_000167_030 Hb_116420_020--Hb_000167_030 Hb_025645_030 Hb_025645_030 Hb_116420_020--Hb_025645_030 Hb_001096_030 Hb_001096_030 Hb_116420_020--Hb_001096_030 Hb_116420_020--Hb_007254_080 Hb_005663_120 Hb_005663_120 Hb_116420_020--Hb_005663_120 Hb_000110_170 Hb_000110_170 Hb_007254_080--Hb_000110_170 Hb_004545_130 Hb_004545_130 Hb_007254_080--Hb_004545_130 Hb_002243_060 Hb_002243_060 Hb_007254_080--Hb_002243_060 Hb_004567_020 Hb_004567_020 Hb_007254_080--Hb_004567_020 Hb_005000_180 Hb_005000_180 Hb_007254_080--Hb_005000_180 Hb_147752_010 Hb_147752_010 Hb_007254_080--Hb_147752_010 Hb_002704_050 Hb_002704_050 Hb_000592_060--Hb_002704_050 Hb_000592_060--Hb_000431_160 Hb_000318_490 Hb_000318_490 Hb_000592_060--Hb_000318_490 Hb_000103_550 Hb_000103_550 Hb_000592_060--Hb_000103_550 Hb_000281_230 Hb_000281_230 Hb_000592_060--Hb_000281_230 Hb_000592_060--Hb_004545_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.28065 0.470226 9.98742 27.1325 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
61.5846 164.866 54.118 9.53647 6.2315

CAGE analysis