Hb_002704_050

Information

Type -
Description -
Location Contig2704: 59244-63194
Sequence    

Annotation

kegg
ID rcu:RCOM_0246510
description cysteine-type peptidase, putative
nr
ID XP_002534273.1
description cysteine-type peptidase, putative [Ricinus communis]
swissprot
ID Q8LBZ4
description OTU domain-containing protein At3g57810 OS=Arabidopsis thaliana GN=At3g57810 PE=2 SV=1
trembl
ID B9T7Q4
description Cysteine-type peptidase, putative OS=Ricinus communis GN=RCOM_0246510 PE=4 SV=1
Gene Ontology
ID GO:0008233
description otu domain-containing protein at3g57810

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002704_050 0.0 - - cysteine-type peptidase, putative [Ricinus communis]
2 Hb_000592_060 0.1119059543 - - PREDICTED: ras-related protein RABA6a [Populus euphratica]
3 Hb_012022_100 0.1409973028 - - CPRD49 family protein [Populus trichocarpa]
4 Hb_000613_160 0.142954923 - - coated vesicle membrane protein, putative [Ricinus communis]
5 Hb_000788_080 0.1487620169 - - PREDICTED: uncharacterized protein LOC105629703 isoform X1 [Jatropha curcas]
6 Hb_089100_030 0.1555532773 - - -
7 Hb_002043_120 0.1581197806 - - protein with unknown function [Ricinus communis]
8 Hb_000318_490 0.1637998632 - - PREDICTED: mitochondrial import receptor subunit TOM6 homolog [Jatropha curcas]
9 Hb_003095_070 0.1643832677 - - hypothetical protein POPTR_0009s11230g [Populus trichocarpa]
10 Hb_001511_140 0.1659129093 - - PREDICTED: RING-H2 finger protein ATL66 [Jatropha curcas]
11 Hb_000103_550 0.1690411484 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 2 isoform X1 [Jatropha curcas]
12 Hb_000167_030 0.1694826508 - - PREDICTED: uncharacterized protein LOC105641111 isoform X1 [Jatropha curcas]
13 Hb_004545_130 0.1737246609 - - uncharacterized protein LOC100305465 [Glycine max]
14 Hb_001373_100 0.1745506299 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001159_200 0.1754894681 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
16 Hb_003211_050 0.1764979097 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
17 Hb_000809_030 0.1765950002 desease resistance Gene Name: RPW8 PREDICTED: probable disease resistance protein At5g66900 [Prunus mume]
18 Hb_000979_250 0.1781179013 - - conserved hypothetical protein [Ricinus communis]
19 Hb_012053_040 0.1787786641 - - PREDICTED: putative phospholipid:diacylglycerol acyltransferase 2 [Jatropha curcas]
20 Hb_009838_040 0.1807358911 - - hypothetical protein JCGZ_12866 [Jatropha curcas]

Gene co-expression network

sample Hb_002704_050 Hb_002704_050 Hb_000592_060 Hb_000592_060 Hb_002704_050--Hb_000592_060 Hb_012022_100 Hb_012022_100 Hb_002704_050--Hb_012022_100 Hb_000613_160 Hb_000613_160 Hb_002704_050--Hb_000613_160 Hb_000788_080 Hb_000788_080 Hb_002704_050--Hb_000788_080 Hb_089100_030 Hb_089100_030 Hb_002704_050--Hb_089100_030 Hb_002043_120 Hb_002043_120 Hb_002704_050--Hb_002043_120 Hb_000431_160 Hb_000431_160 Hb_000592_060--Hb_000431_160 Hb_000318_490 Hb_000318_490 Hb_000592_060--Hb_000318_490 Hb_000103_550 Hb_000103_550 Hb_000592_060--Hb_000103_550 Hb_000281_230 Hb_000281_230 Hb_000592_060--Hb_000281_230 Hb_004545_130 Hb_004545_130 Hb_000592_060--Hb_004545_130 Hb_012022_100--Hb_002043_120 Hb_000792_120 Hb_000792_120 Hb_012022_100--Hb_000792_120 Hb_003226_240 Hb_003226_240 Hb_012022_100--Hb_003226_240 Hb_000329_660 Hb_000329_660 Hb_012022_100--Hb_000329_660 Hb_001373_100 Hb_001373_100 Hb_012022_100--Hb_001373_100 Hb_000613_160--Hb_000788_080 Hb_005000_160 Hb_005000_160 Hb_000613_160--Hb_005000_160 Hb_001507_070 Hb_001507_070 Hb_000613_160--Hb_001507_070 Hb_001276_060 Hb_001276_060 Hb_000613_160--Hb_001276_060 Hb_000979_250 Hb_000979_250 Hb_000613_160--Hb_000979_250 Hb_003095_070 Hb_003095_070 Hb_000788_080--Hb_003095_070 Hb_000788_080--Hb_005000_160 Hb_001511_140 Hb_001511_140 Hb_000788_080--Hb_001511_140 Hb_001159_200 Hb_001159_200 Hb_000788_080--Hb_001159_200 Hb_009838_040 Hb_009838_040 Hb_000788_080--Hb_009838_040 Hb_072912_020 Hb_072912_020 Hb_089100_030--Hb_072912_020 Hb_089100_020 Hb_089100_020 Hb_089100_030--Hb_089100_020 Hb_000544_110 Hb_000544_110 Hb_089100_030--Hb_000544_110 Hb_000191_020 Hb_000191_020 Hb_089100_030--Hb_000191_020 Hb_005137_020 Hb_005137_020 Hb_089100_030--Hb_005137_020 Hb_002043_120--Hb_000792_120 Hb_002043_120--Hb_000592_060 Hb_002043_120--Hb_000613_160 Hb_001579_140 Hb_001579_140 Hb_002043_120--Hb_001579_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.74589 0.107548 0.303598 3.57961 1.03181 0.401808
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.8844 30.4461 16.4567 1.41243 1.05609

CAGE analysis