Hb_012022_100

Information

Type -
Description -
Location Contig12022: 156038-157549
Sequence    

Annotation

kegg
ID pop:POPTR_0016s12310g
description POPTRDRAFT_735818; CPRD49 family protein
nr
ID XP_002322977.1
description CPRD49 family protein [Populus trichocarpa]
swissprot
ID O80443
description GDSL esterase/lipase At2g38180 OS=Arabidopsis thaliana GN=At2g38180 PE=2 SV=1
trembl
ID B9IG91
description CPRD49 family protein OS=Populus trichocarpa GN=POPTR_0016s12310g PE=4 SV=1
Gene Ontology
ID GO:0016788
description gdsl esterase lipase cprd49-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06277: 156051-157509 , PASA_asmbl_06278: 156110-157509
cDNA
(Sanger)
(ID:Location)		 013_C19.ab1: 156290-157502

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012022_100 0.0 - - CPRD49 family protein [Populus trichocarpa]
2 Hb_002043_120 0.1215794691 - - protein with unknown function [Ricinus communis]
3 Hb_000792_120 0.1374428547 - - PREDICTED: mitochondrial uncoupling protein 1 isoform X2 [Jatropha curcas]
4 Hb_002704_050 0.1409973028 - - cysteine-type peptidase, putative [Ricinus communis]
5 Hb_003226_240 0.1444020362 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
6 Hb_000329_660 0.1622346489 - - PREDICTED: carotenoid cleavage dioxygenase 7, chloroplastic [Jatropha curcas]
7 Hb_001373_100 0.1652819857 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000592_060 0.1665912532 - - PREDICTED: ras-related protein RABA6a [Populus euphratica]
9 Hb_000300_210 0.1677254289 - - gd2b, putative [Ricinus communis]
10 Hb_001425_110 0.1727916634 - - hypothetical protein Csa_6G106200 [Cucumis sativus]
11 Hb_001433_100 0.1733563602 - - PREDICTED: F-box/LRR-repeat protein 3 isoform X1 [Jatropha curcas]
12 Hb_003211_050 0.1738305169 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
13 Hb_000453_300 0.17557593 - - latex cystatin [Hevea brasiliensis]
14 Hb_000613_160 0.1760186544 - - coated vesicle membrane protein, putative [Ricinus communis]
15 Hb_023051_020 0.178022825 - - -
16 Hb_000387_060 0.1793642979 - - -
17 Hb_034482_040 0.1847960038 - - aspartate kinase, partial [Francisella tularensis]
18 Hb_004545_130 0.1922308307 - - uncharacterized protein LOC100305465 [Glycine max]
19 Hb_001579_140 0.1966737792 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO2 isoform X2 [Jatropha curcas]
20 Hb_008066_030 0.1975148234 - - PREDICTED: uncharacterized protein LOC105631333 [Jatropha curcas]

Gene co-expression network

sample Hb_012022_100 Hb_012022_100 Hb_002043_120 Hb_002043_120 Hb_012022_100--Hb_002043_120 Hb_000792_120 Hb_000792_120 Hb_012022_100--Hb_000792_120 Hb_002704_050 Hb_002704_050 Hb_012022_100--Hb_002704_050 Hb_003226_240 Hb_003226_240 Hb_012022_100--Hb_003226_240 Hb_000329_660 Hb_000329_660 Hb_012022_100--Hb_000329_660 Hb_001373_100 Hb_001373_100 Hb_012022_100--Hb_001373_100 Hb_002043_120--Hb_002704_050 Hb_002043_120--Hb_000792_120 Hb_000592_060 Hb_000592_060 Hb_002043_120--Hb_000592_060 Hb_000613_160 Hb_000613_160 Hb_002043_120--Hb_000613_160 Hb_001579_140 Hb_001579_140 Hb_002043_120--Hb_001579_140 Hb_000792_120--Hb_001579_140 Hb_000300_210 Hb_000300_210 Hb_000792_120--Hb_000300_210 Hb_000792_120--Hb_000329_660 Hb_000387_060 Hb_000387_060 Hb_000792_120--Hb_000387_060 Hb_008066_030 Hb_008066_030 Hb_000792_120--Hb_008066_030 Hb_002704_050--Hb_000592_060 Hb_002704_050--Hb_000613_160 Hb_000788_080 Hb_000788_080 Hb_002704_050--Hb_000788_080 Hb_089100_030 Hb_089100_030 Hb_002704_050--Hb_089100_030 Hb_002989_040 Hb_002989_040 Hb_003226_240--Hb_002989_040 Hb_001433_100 Hb_001433_100 Hb_003226_240--Hb_001433_100 Hb_034482_040 Hb_034482_040 Hb_003226_240--Hb_034482_040 Hb_023051_020 Hb_023051_020 Hb_003226_240--Hb_023051_020 Hb_000920_320 Hb_000920_320 Hb_003226_240--Hb_000920_320 Hb_032202_250 Hb_032202_250 Hb_003226_240--Hb_032202_250 Hb_003211_050 Hb_003211_050 Hb_000329_660--Hb_003211_050 Hb_000329_660--Hb_001373_100 Hb_000329_660--Hb_000387_060 Hb_000329_660--Hb_000300_210 Hb_000329_660--Hb_003226_240 Hb_001276_060 Hb_001276_060 Hb_000329_660--Hb_001276_060 Hb_001373_100--Hb_003226_240 Hb_001842_080 Hb_001842_080 Hb_001373_100--Hb_001842_080 Hb_001373_100--Hb_000613_160 Hb_003095_070 Hb_003095_070 Hb_001373_100--Hb_003095_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.2204 0.588314 4.4016 36.1997 3.9759 2.29167
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
386.903 488.205 144.515 30.8941 7.58594

CAGE analysis