Hb_008066_030

Information

Type -
Description -
Location Contig8066: 19353-20278
Sequence    

Annotation

kegg
ID pop:POPTR_0001s16370g
description hypothetical protein
nr
ID XP_012068803.1
description PREDICTED: uncharacterized protein LOC105631333 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KWV2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24636 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59058: 19419-19642
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008066_030 0.0 - - PREDICTED: uncharacterized protein LOC105631333 [Jatropha curcas]
2 Hb_000979_250 0.1272737944 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003198_010 0.1332074097 - - Valine--tRNA ligase [Gossypium arboreum]
4 Hb_004567_020 0.1512048252 - - Small ubiquitin-related modifier 2 [Morus notabilis]
5 Hb_001433_100 0.1520426438 - - PREDICTED: F-box/LRR-repeat protein 3 isoform X1 [Jatropha curcas]
6 Hb_000792_120 0.1700888797 - - PREDICTED: mitochondrial uncoupling protein 1 isoform X2 [Jatropha curcas]
7 Hb_000300_210 0.178214608 - - gd2b, putative [Ricinus communis]
8 Hb_000613_160 0.1797043476 - - coated vesicle membrane protein, putative [Ricinus communis]
9 Hb_001579_140 0.1802821542 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO2 isoform X2 [Jatropha curcas]
10 Hb_000329_660 0.1886400661 - - PREDICTED: carotenoid cleavage dioxygenase 7, chloroplastic [Jatropha curcas]
11 Hb_000483_480 0.1895057904 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004545_130 0.1916032766 - - uncharacterized protein LOC100305465 [Glycine max]
13 Hb_000167_030 0.1916973358 - - PREDICTED: uncharacterized protein LOC105641111 isoform X1 [Jatropha curcas]
14 Hb_003181_050 0.1919513554 - - PREDICTED: DNA replication complex GINS protein PSF2 [Jatropha curcas]
15 Hb_001511_140 0.1939602646 - - PREDICTED: RING-H2 finger protein ATL66 [Jatropha curcas]
16 Hb_000371_070 0.1952819066 - - PREDICTED: uncharacterized protein LOC103863319 [Brassica rapa]
17 Hb_000152_100 0.196530251 - - PREDICTED: probable protein phosphatase 2C 75 isoform X2 [Jatropha curcas]
18 Hb_012022_100 0.1975148234 - - CPRD49 family protein [Populus trichocarpa]
19 Hb_000692_020 0.19817158 - - PREDICTED: E3 ubiquitin-protein ligase ATL23 [Jatropha curcas]
20 Hb_002704_050 0.198946626 - - cysteine-type peptidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_008066_030 Hb_008066_030 Hb_000979_250 Hb_000979_250 Hb_008066_030--Hb_000979_250 Hb_003198_010 Hb_003198_010 Hb_008066_030--Hb_003198_010 Hb_004567_020 Hb_004567_020 Hb_008066_030--Hb_004567_020 Hb_001433_100 Hb_001433_100 Hb_008066_030--Hb_001433_100 Hb_000792_120 Hb_000792_120 Hb_008066_030--Hb_000792_120 Hb_000300_210 Hb_000300_210 Hb_008066_030--Hb_000300_210 Hb_001511_140 Hb_001511_140 Hb_000979_250--Hb_001511_140 Hb_000613_160 Hb_000613_160 Hb_000979_250--Hb_000613_160 Hb_001776_170 Hb_001776_170 Hb_000979_250--Hb_001776_170 Hb_000979_250--Hb_003198_010 Hb_001488_370 Hb_001488_370 Hb_000979_250--Hb_001488_370 Hb_000696_220 Hb_000696_220 Hb_003198_010--Hb_000696_220 Hb_000853_240 Hb_000853_240 Hb_003198_010--Hb_000853_240 Hb_089100_020 Hb_089100_020 Hb_003198_010--Hb_089100_020 Hb_001386_050 Hb_001386_050 Hb_003198_010--Hb_001386_050 Hb_003181_050 Hb_003181_050 Hb_003198_010--Hb_003181_050 Hb_000032_350 Hb_000032_350 Hb_003198_010--Hb_000032_350 Hb_120823_010 Hb_120823_010 Hb_004567_020--Hb_120823_010 Hb_004545_130 Hb_004545_130 Hb_004567_020--Hb_004545_130 Hb_000878_020 Hb_000878_020 Hb_004567_020--Hb_000878_020 Hb_000110_170 Hb_000110_170 Hb_004567_020--Hb_000110_170 Hb_147752_010 Hb_147752_010 Hb_004567_020--Hb_147752_010 Hb_007254_080 Hb_007254_080 Hb_004567_020--Hb_007254_080 Hb_003226_240 Hb_003226_240 Hb_001433_100--Hb_003226_240 Hb_034482_040 Hb_034482_040 Hb_001433_100--Hb_034482_040 Hb_001433_100--Hb_000300_210 Hb_032202_250 Hb_032202_250 Hb_001433_100--Hb_032202_250 Hb_000329_660 Hb_000329_660 Hb_001433_100--Hb_000329_660 Hb_012022_100 Hb_012022_100 Hb_000792_120--Hb_012022_100 Hb_001579_140 Hb_001579_140 Hb_000792_120--Hb_001579_140 Hb_000792_120--Hb_000300_210 Hb_000792_120--Hb_000329_660 Hb_000387_060 Hb_000387_060 Hb_000792_120--Hb_000387_060 Hb_000300_210--Hb_032202_250 Hb_000300_210--Hb_003226_240 Hb_001425_110 Hb_001425_110 Hb_000300_210--Hb_001425_110 Hb_000300_210--Hb_000329_660
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.93958 4.06592 5.52449 3.68977 1.09695 0.552876
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.9727 49.0477 16.757 2.10924 0.392279

CAGE analysis