Hb_000032_350

Information

Type -
Description -
Location Contig32: 284757-287225
Sequence    

Annotation

kegg
ID rcu:RCOM_1692080
description hypothetical protein
nr
ID XP_002509966.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RCT2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1692080 PE=4 SV=1
Gene Ontology
ID GO:0005739
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33726: 284794-288094
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000032_350 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000696_220 0.1057163803 - - PREDICTED: uncharacterized protein LOC105647113 [Jatropha curcas]
3 Hb_000853_240 0.1262276605 - - -
4 Hb_000963_030 0.1319097069 - - PREDICTED: uncharacterized protein LOC105628095 [Jatropha curcas]
5 Hb_003198_010 0.1325684957 - - Valine--tRNA ligase [Gossypium arboreum]
6 Hb_007943_140 0.1397589794 - - PREDICTED: uncharacterized protein LOC103340977 [Prunus mume]
7 Hb_011689_050 0.1410324049 - - hypothetical protein POPTR_0008s20290g [Populus trichocarpa]
8 Hb_168711_010 0.1453026366 - - PREDICTED: (DL)-glycerol-3-phosphatase 2 [Sesamum indicum]
9 Hb_000544_110 0.1476656058 - - PREDICTED: probable calcium-binding protein CML27 [Jatropha curcas]
10 Hb_089100_020 0.1512761763 - - PREDICTED: cyclin-A1-1 [Jatropha curcas]
11 Hb_000172_420 0.1534853275 - - 60S ribosomal protein L30, putative [Ricinus communis]
12 Hb_004545_130 0.1538722489 - - uncharacterized protein LOC100305465 [Glycine max]
13 Hb_002248_100 0.1574016331 - - hypothetical protein VITISV_027197 [Vitis vinifera]
14 Hb_000329_660 0.158089934 - - PREDICTED: carotenoid cleavage dioxygenase 7, chloroplastic [Jatropha curcas]
15 Hb_000635_080 0.1606249023 - - 60S ribosomal protein L17A [Hevea brasiliensis]
16 Hb_001101_010 0.1622248538 - - hypothetical protein POPTR_0004s18730g [Populus trichocarpa]
17 Hb_000617_110 0.1639569971 - - translationally controlled tumor protein [Hevea brasiliensis]
18 Hb_004129_150 0.1641990611 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-4a-like [Jatropha curcas]
19 Hb_003211_050 0.1650141445 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
20 Hb_001102_250 0.1660861392 - - PREDICTED: E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000032_350 Hb_000032_350 Hb_000696_220 Hb_000696_220 Hb_000032_350--Hb_000696_220 Hb_000853_240 Hb_000853_240 Hb_000032_350--Hb_000853_240 Hb_000963_030 Hb_000963_030 Hb_000032_350--Hb_000963_030 Hb_003198_010 Hb_003198_010 Hb_000032_350--Hb_003198_010 Hb_007943_140 Hb_007943_140 Hb_000032_350--Hb_007943_140 Hb_011689_050 Hb_011689_050 Hb_000032_350--Hb_011689_050 Hb_000696_220--Hb_000853_240 Hb_000696_220--Hb_003198_010 Hb_089100_020 Hb_089100_020 Hb_000696_220--Hb_089100_020 Hb_000696_220--Hb_000963_030 Hb_001386_050 Hb_001386_050 Hb_000696_220--Hb_001386_050 Hb_000853_240--Hb_001386_050 Hb_000853_240--Hb_003198_010 Hb_000172_420 Hb_000172_420 Hb_000853_240--Hb_000172_420 Hb_000853_240--Hb_000963_030 Hb_000805_130 Hb_000805_130 Hb_000853_240--Hb_000805_130 Hb_000963_030--Hb_011689_050 Hb_000963_030--Hb_007943_140 Hb_000963_030--Hb_000172_420 Hb_002248_100 Hb_002248_100 Hb_000963_030--Hb_002248_100 Hb_026398_010 Hb_026398_010 Hb_000963_030--Hb_026398_010 Hb_000963_030--Hb_000805_130 Hb_003198_010--Hb_089100_020 Hb_003198_010--Hb_001386_050 Hb_003181_050 Hb_003181_050 Hb_003198_010--Hb_003181_050 Hb_007943_140--Hb_002248_100 Hb_001017_070 Hb_001017_070 Hb_007943_140--Hb_001017_070 Hb_007943_140--Hb_000172_420 Hb_097007_010 Hb_097007_010 Hb_007943_140--Hb_097007_010 Hb_007943_140--Hb_026398_010 Hb_004958_050 Hb_004958_050 Hb_011689_050--Hb_004958_050 Hb_001616_020 Hb_001616_020 Hb_011689_050--Hb_001616_020 Hb_001123_120 Hb_001123_120 Hb_011689_050--Hb_001123_120 Hb_000161_050 Hb_000161_050 Hb_011689_050--Hb_000161_050 Hb_000144_110 Hb_000144_110 Hb_011689_050--Hb_000144_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
62.1124 9.02663 16.8476 11.5728 18.1978 16.8192
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
198.089 315.211 66.0871 29.8282 3.46851

CAGE analysis