Hb_000696_220

Information

Type -
Description -
Location Contig696: 131148-136615
Sequence    

Annotation

kegg
ID pop:POPTR_0001s02150g
description hypothetical protein
nr
ID XP_012088495.1
description PREDICTED: uncharacterized protein LOC105647113 [Jatropha curcas]
swissprot
ID Q9QWZ1
description Cell cycle checkpoint protein RAD1 OS=Mus musculus GN=Rad1 PE=1 SV=1
trembl
ID A0A067JVH0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25378 PE=4 SV=1
Gene Ontology
ID GO:0005634
description syntaxin-22 -like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54593: 131070-132825 , PASA_asmbl_54594: 132849-134489
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000696_220 0.0 - - PREDICTED: uncharacterized protein LOC105647113 [Jatropha curcas]
2 Hb_000853_240 0.0565525035 - - -
3 Hb_003198_010 0.0981640022 - - Valine--tRNA ligase [Gossypium arboreum]
4 Hb_089100_020 0.1039122036 - - PREDICTED: cyclin-A1-1 [Jatropha curcas]
5 Hb_000032_350 0.1057163803 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000963_030 0.107706672 - - PREDICTED: uncharacterized protein LOC105628095 [Jatropha curcas]
7 Hb_001386_050 0.1082609244 - - PREDICTED: protein transport protein Sec61 subunit gamma-like [Jatropha curcas]
8 Hb_011689_050 0.111213667 - - hypothetical protein POPTR_0008s20290g [Populus trichocarpa]
9 Hb_000172_420 0.1143340505 - - 60S ribosomal protein L30, putative [Ricinus communis]
10 Hb_000805_130 0.1178547511 - - conserved hypothetical protein [Ricinus communis]
11 Hb_008948_050 0.1225483553 - - hypothetical protein JCGZ_13339 [Jatropha curcas]
12 Hb_000175_130 0.1311437305 - - PREDICTED: PTI1-like tyrosine-protein kinase At3g15890 [Jatropha curcas]
13 Hb_007943_140 0.1324969547 - - PREDICTED: uncharacterized protein LOC103340977 [Prunus mume]
14 Hb_007575_070 0.1325507238 - - Histone H3.2 [Glycine soja]
15 Hb_000159_070 0.1355429722 - - JHL03K20.4 [Jatropha curcas]
16 Hb_017862_010 0.1384336705 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
17 Hb_000144_110 0.1396753809 - - hypothetical protein CICLE_v10013189mg [Citrus clementina]
18 Hb_001785_040 0.1414426856 - - cytochrome b5 isoform Cb5-A [Vernicia fordii]
19 Hb_004755_030 0.1417040992 - - EG964 [Manihot glaziovii]
20 Hb_000544_110 0.14214138 - - PREDICTED: probable calcium-binding protein CML27 [Jatropha curcas]

Gene co-expression network

sample Hb_000696_220 Hb_000696_220 Hb_000853_240 Hb_000853_240 Hb_000696_220--Hb_000853_240 Hb_003198_010 Hb_003198_010 Hb_000696_220--Hb_003198_010 Hb_089100_020 Hb_089100_020 Hb_000696_220--Hb_089100_020 Hb_000032_350 Hb_000032_350 Hb_000696_220--Hb_000032_350 Hb_000963_030 Hb_000963_030 Hb_000696_220--Hb_000963_030 Hb_001386_050 Hb_001386_050 Hb_000696_220--Hb_001386_050 Hb_000853_240--Hb_001386_050 Hb_000853_240--Hb_003198_010 Hb_000172_420 Hb_000172_420 Hb_000853_240--Hb_000172_420 Hb_000853_240--Hb_000963_030 Hb_000805_130 Hb_000805_130 Hb_000853_240--Hb_000805_130 Hb_003198_010--Hb_089100_020 Hb_003198_010--Hb_001386_050 Hb_003181_050 Hb_003181_050 Hb_003198_010--Hb_003181_050 Hb_003198_010--Hb_000032_350 Hb_001785_040 Hb_001785_040 Hb_089100_020--Hb_001785_040 Hb_089100_020--Hb_000853_240 Hb_000191_020 Hb_000191_020 Hb_089100_020--Hb_000191_020 Hb_089100_020--Hb_003181_050 Hb_000032_350--Hb_000853_240 Hb_000032_350--Hb_000963_030 Hb_007943_140 Hb_007943_140 Hb_000032_350--Hb_007943_140 Hb_011689_050 Hb_011689_050 Hb_000032_350--Hb_011689_050 Hb_000963_030--Hb_011689_050 Hb_000963_030--Hb_007943_140 Hb_000963_030--Hb_000172_420 Hb_002248_100 Hb_002248_100 Hb_000963_030--Hb_002248_100 Hb_026398_010 Hb_026398_010 Hb_000963_030--Hb_026398_010 Hb_000963_030--Hb_000805_130 Hb_008948_050 Hb_008948_050 Hb_001386_050--Hb_008948_050 Hb_000878_020 Hb_000878_020 Hb_001386_050--Hb_000878_020 Hb_002344_070 Hb_002344_070 Hb_001386_050--Hb_002344_070 Hb_006588_080 Hb_006588_080 Hb_001386_050--Hb_006588_080 Hb_001386_050--Hb_000805_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.35763 0.816298 3.15007 2.47808 3.69624 3.33994
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.3698 39.448 9.9954 2.14532 1.31219

CAGE analysis