Hb_007943_140

Information

Type -
Description -
Location Contig7943: 123107-126864
Sequence    

Annotation

kegg
ID pmum:103340977
description uncharacterized LOC103340977
nr
ID XP_008242671.1
description PREDICTED: uncharacterized protein LOC103340977 [Prunus mume]
swissprot
ID -
description -
trembl
ID M5VRS8
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013894mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58477: 123349-124621
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007943_140 0.0 - - PREDICTED: uncharacterized protein LOC103340977 [Prunus mume]
2 Hb_002248_100 0.0776474926 - - hypothetical protein VITISV_027197 [Vitis vinifera]
3 Hb_000963_030 0.0889872302 - - PREDICTED: uncharacterized protein LOC105628095 [Jatropha curcas]
4 Hb_001017_070 0.0964298026 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000172_420 0.1002052237 - - 60S ribosomal protein L30, putative [Ricinus communis]
6 Hb_097007_010 0.1083498773 - - hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]
7 Hb_026398_010 0.1091400072 - - hypothetical protein B456_010G132100 [Gossypium raimondii]
8 Hb_000853_240 0.1120301428 - - -
9 Hb_007575_070 0.11457862 - - Histone H3.2 [Glycine soja]
10 Hb_000635_080 0.1150517724 - - 60S ribosomal protein L17A [Hevea brasiliensis]
11 Hb_011689_050 0.1182767167 - - hypothetical protein POPTR_0008s20290g [Populus trichocarpa]
12 Hb_004109_020 0.1207426233 - - 60S ribosomal protein L18aA [Hevea brasiliensis]
13 Hb_000789_110 0.1215169872 - - RecName: Full=Profilin-1; AltName: Full=Pollen allergen Hev b 8.0101; AltName: Allergen=Hev b 8.0101 [Hevea brasiliensis]
14 Hb_000085_330 0.1235722518 - - PREDICTED: 40S ribosomal protein S8 [Jatropha curcas]
15 Hb_172221_010 0.1240018885 - - PREDICTED: 60S ribosomal protein L37-1 [Jatropha curcas]
16 Hb_183086_040 0.1249375929 - - cytochrome b5 isoform Cb5-A [Vernicia fordii]
17 Hb_004735_050 0.1251614657 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
18 Hb_003988_040 0.1273856864 - - PREDICTED: uncharacterized protein LOC105633684 [Jatropha curcas]
19 Hb_006588_080 0.1282414976 - - hypothetical protein JCGZ_25746 [Jatropha curcas]
20 Hb_007304_070 0.1282988656 - - hypoxanthine-guanine phosphoribosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_007943_140 Hb_007943_140 Hb_002248_100 Hb_002248_100 Hb_007943_140--Hb_002248_100 Hb_000963_030 Hb_000963_030 Hb_007943_140--Hb_000963_030 Hb_001017_070 Hb_001017_070 Hb_007943_140--Hb_001017_070 Hb_000172_420 Hb_000172_420 Hb_007943_140--Hb_000172_420 Hb_097007_010 Hb_097007_010 Hb_007943_140--Hb_097007_010 Hb_026398_010 Hb_026398_010 Hb_007943_140--Hb_026398_010 Hb_002248_100--Hb_000172_420 Hb_000635_080 Hb_000635_080 Hb_002248_100--Hb_000635_080 Hb_006588_080 Hb_006588_080 Hb_002248_100--Hb_006588_080 Hb_010827_020 Hb_010827_020 Hb_002248_100--Hb_010827_020 Hb_172221_010 Hb_172221_010 Hb_002248_100--Hb_172221_010 Hb_011689_050 Hb_011689_050 Hb_000963_030--Hb_011689_050 Hb_000963_030--Hb_000172_420 Hb_000963_030--Hb_002248_100 Hb_000963_030--Hb_026398_010 Hb_000805_130 Hb_000805_130 Hb_000963_030--Hb_000805_130 Hb_000881_080 Hb_000881_080 Hb_001017_070--Hb_000881_080 Hb_001017_070--Hb_002248_100 Hb_001017_070--Hb_000635_080 Hb_183086_040 Hb_183086_040 Hb_001017_070--Hb_183086_040 Hb_002918_140 Hb_002918_140 Hb_001017_070--Hb_002918_140 Hb_000172_420--Hb_006588_080 Hb_000062_390 Hb_000062_390 Hb_000172_420--Hb_000062_390 Hb_000172_420--Hb_000635_080 Hb_000270_720 Hb_000270_720 Hb_000172_420--Hb_000270_720 Hb_008948_050 Hb_008948_050 Hb_000172_420--Hb_008948_050 Hb_000236_460 Hb_000236_460 Hb_097007_010--Hb_000236_460 Hb_003549_020 Hb_003549_020 Hb_097007_010--Hb_003549_020 Hb_002320_060 Hb_002320_060 Hb_097007_010--Hb_002320_060 Hb_097007_010--Hb_026398_010 Hb_011311_010 Hb_011311_010 Hb_097007_010--Hb_011311_010 Hb_000085_330 Hb_000085_330 Hb_097007_010--Hb_000085_330 Hb_026398_010--Hb_172221_010 Hb_026398_010--Hb_011311_010 Hb_002660_030 Hb_002660_030 Hb_026398_010--Hb_002660_030 Hb_000329_020 Hb_000329_020 Hb_026398_010--Hb_000329_020 Hb_000042_260 Hb_000042_260 Hb_026398_010--Hb_000042_260 Hb_002588_010 Hb_002588_010 Hb_026398_010--Hb_002588_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.02874 1.29072 0.591372 1.34078 1.24506 1.50876
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.2909 12.4454 2.60212 1.5765 0.451645

CAGE analysis