Hb_001017_070

Information

Type -
Description -
Location Contig1017: 78255-85784
Sequence    

Annotation

kegg
ID rcu:RCOM_1083580
description hypothetical protein
nr
ID XP_002515052.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RMT3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1083580 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00784: 71693-79146
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001017_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000881_080 0.0925173532 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002248_100 0.0929998757 - - hypothetical protein VITISV_027197 [Vitis vinifera]
4 Hb_007943_140 0.0964298026 - - PREDICTED: uncharacterized protein LOC103340977 [Prunus mume]
5 Hb_000635_080 0.1050712604 - - 60S ribosomal protein L17A [Hevea brasiliensis]
6 Hb_183086_040 0.1070538751 - - cytochrome b5 isoform Cb5-A [Vernicia fordii]
7 Hb_002918_140 0.1078890656 - - PREDICTED: protein yippee-like At5g53940 [Jatropha curcas]
8 Hb_007304_070 0.108767875 - - hypoxanthine-guanine phosphoribosyltransferase, putative [Ricinus communis]
9 Hb_017862_010 0.1114721694 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
10 Hb_001386_050 0.1136290327 - - PREDICTED: protein transport protein Sec61 subunit gamma-like [Jatropha curcas]
11 Hb_007575_070 0.1137136582 - - Histone H3.2 [Glycine soja]
12 Hb_000300_390 0.114345139 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
13 Hb_004109_020 0.115700695 - - 60S ribosomal protein L18aA [Hevea brasiliensis]
14 Hb_000365_080 0.1166193112 - - PREDICTED: uncharacterized protein LOC105649037 [Jatropha curcas]
15 Hb_000224_090 0.1167378022 - - Eukaryotic translation initiation factor 1A [Gossypium arboreum]
16 Hb_000236_150 0.1173362958 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
17 Hb_000085_330 0.1194266173 - - PREDICTED: 40S ribosomal protein S8 [Jatropha curcas]
18 Hb_000789_110 0.1203401405 - - RecName: Full=Profilin-1; AltName: Full=Pollen allergen Hev b 8.0101; AltName: Allergen=Hev b 8.0101 [Hevea brasiliensis]
19 Hb_000780_210 0.1212005022 - - PREDICTED: transmembrane protein 256 homolog [Jatropha curcas]
20 Hb_005000_180 0.1220289644 - - hypothetical protein JCGZ_07408 [Jatropha curcas]

Gene co-expression network

sample Hb_001017_070 Hb_001017_070 Hb_000881_080 Hb_000881_080 Hb_001017_070--Hb_000881_080 Hb_002248_100 Hb_002248_100 Hb_001017_070--Hb_002248_100 Hb_007943_140 Hb_007943_140 Hb_001017_070--Hb_007943_140 Hb_000635_080 Hb_000635_080 Hb_001017_070--Hb_000635_080 Hb_183086_040 Hb_183086_040 Hb_001017_070--Hb_183086_040 Hb_002918_140 Hb_002918_140 Hb_001017_070--Hb_002918_140 Hb_032260_030 Hb_032260_030 Hb_000881_080--Hb_032260_030 Hb_007304_070 Hb_007304_070 Hb_000881_080--Hb_007304_070 Hb_000905_180 Hb_000905_180 Hb_000881_080--Hb_000905_180 Hb_001016_090 Hb_001016_090 Hb_000881_080--Hb_001016_090 Hb_000236_150 Hb_000236_150 Hb_000881_080--Hb_000236_150 Hb_001780_050 Hb_001780_050 Hb_000881_080--Hb_001780_050 Hb_000172_420 Hb_000172_420 Hb_002248_100--Hb_000172_420 Hb_002248_100--Hb_000635_080 Hb_002248_100--Hb_007943_140 Hb_006588_080 Hb_006588_080 Hb_002248_100--Hb_006588_080 Hb_010827_020 Hb_010827_020 Hb_002248_100--Hb_010827_020 Hb_172221_010 Hb_172221_010 Hb_002248_100--Hb_172221_010 Hb_000963_030 Hb_000963_030 Hb_007943_140--Hb_000963_030 Hb_007943_140--Hb_000172_420 Hb_097007_010 Hb_097007_010 Hb_007943_140--Hb_097007_010 Hb_026398_010 Hb_026398_010 Hb_007943_140--Hb_026398_010 Hb_001377_380 Hb_001377_380 Hb_000635_080--Hb_001377_380 Hb_000780_210 Hb_000780_210 Hb_000635_080--Hb_000780_210 Hb_000635_080--Hb_006588_080 Hb_004545_130 Hb_004545_130 Hb_000635_080--Hb_004545_130 Hb_002316_120 Hb_002316_120 Hb_000635_080--Hb_002316_120 Hb_000922_100 Hb_000922_100 Hb_183086_040--Hb_000922_100 Hb_183086_040--Hb_000780_210 Hb_000896_120 Hb_000896_120 Hb_183086_040--Hb_000896_120 Hb_000215_180 Hb_000215_180 Hb_183086_040--Hb_000215_180 Hb_000085_330 Hb_000085_330 Hb_183086_040--Hb_000085_330 Hb_000224_090 Hb_000224_090 Hb_183086_040--Hb_000224_090 Hb_034585_050 Hb_034585_050 Hb_002918_140--Hb_034585_050 Hb_001863_420 Hb_001863_420 Hb_002918_140--Hb_001863_420 Hb_001386_050 Hb_001386_050 Hb_002918_140--Hb_001386_050 Hb_017862_010 Hb_017862_010 Hb_002918_140--Hb_017862_010 Hb_000676_240 Hb_000676_240 Hb_002918_140--Hb_000676_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.290144 0.207878 0.0813643 0.21166 0.329381 0.217083
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.32854 2.08984 0.784779 0.326645 0.15861

CAGE analysis